View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_333 (Length: 247)
Name: NF11982A_low_333
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_333 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37181413 - 37181187
Alignment:
| Q |
1 |
ggagctaaggactgtatttgtttgtatagagagaatttggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37181413 |
ggagctaaggactgtatttgt----atagagagaatttgcttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatt |
37181318 |
T |
|
| Q |
101 |
tgaaggagagttgtttggagaactataagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaagcatttggttgcctacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37181317 |
tgaaggagagttgtttggagaactataagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaagcatttggttgcctacatt |
37181218 |
T |
|
| Q |
201 |
agttataaccccaaaatagtccaatgtgatg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37181217 |
agttataaccccaaaatagtccaatgtgatg |
37181187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 37180349 - 37180512
Alignment:
| Q |
21 |
tttgtatagagagaatttggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgg-a |
119 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| | |||| |||||| |||||||||||||| ||||| ||||||||||||| || ||| || | |
|
|
| T |
37180349 |
tttgtatagagagaatttgatttgggatttgatgagaagcatagggatagtgggtggtcttatatagattgagatagatttgaaggagggtagttcggaa |
37180448 |
T |
|
| Q |
120 |
gaactat-aagagcttttgcaattttaagttagttcaacttcctgtgtttcactttgacaaaag |
182 |
Q |
| |
|
|||| || |||||||||||||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
37180449 |
gaaccatcaagagcttttgcaatttttagttagttcaacttattgggtttcactttgacaaaag |
37180512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 37189505 - 37189365
Alignment:
| Q |
21 |
tttgtatagagagaatttggttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttgga- |
119 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| | |||| |||||| || ||||||||||| ||||||||||||||||||| || ||| ||| |
|
|
| T |
37189505 |
tttgtatagagagaatttgatttgggatttgatgagaagcatagggatagtgggtgatcttatatagattgagagagatttgaaggagggtagttcggat |
37189406 |
T |
|
| Q |
120 |
gaactat-aagagcttttgcaattttaagttagttcaactt |
159 |
Q |
| |
|
|||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
37189405 |
gaaccatcaagagcttttgcaatttttagttagttcaactt |
37189365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 37188021 - 37188197
Alignment:
| Q |
21 |
tttgtatagagagaatttggttttggatttgatgagaaggaaaggggtagtggatggtct--tatatagagtgagagagatttgaaggagagttgtttgg |
118 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| |||||||||||||| |||||||||||||| |||||||||| || ||||||||||||| || |||||| |
|
|
| T |
37188021 |
tttgtatatagagaatttgctttgagattttatgagaaggaaaggagtagtggatggtcttatatatagagtaagcaagatttgaaggagggtagtttgg |
37188120 |
T |
|
| Q |
119 |
agaacta-taagagcttttgcaatt--------ttaagttagttcaacttcctgtgtttcactttgacaaaagcatt |
186 |
Q |
| |
|
||||| | || |||||||||||||| || |||| ||| |||||||| |||||||||||||||||| |||| |
|
|
| T |
37188121 |
agaacaactacgagcttttgcaatttttatttctttagtttgtttaacttcctctgtttcactttgacaaaatcatt |
37188197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 38704423 - 38704569
Alignment:
| Q |
41 |
ttttggatttgatgagaaggaaaggggtagtggatggtcttatatagagtgagagagatttgaaggagagttgtttggagaactataagagcttttgcaa |
140 |
Q |
| |
|
|||||||||| |||| ||| |||||| ||||||||||| ||||||||||| ||||||||||| | || | |||||||| |||| ||| ||||||| |
|
|
| T |
38704423 |
ttttggattttatgaaaagcaaagggatagtggatggttttatatagagtagaagagatttgaatcaaggtagcttggagaataataaaagcatttgcaa |
38704522 |
T |
|
| Q |
141 |
ttttaagttagttcaacttcctgtgtttcactttgacaaaagcattt |
187 |
Q |
| |
|
| |||||||| ||||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
38704523 |
tcttaagttacttcaacttcctgtgttttactttcacaaaaccattt |
38704569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University