View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_340 (Length: 246)
Name: NF11982A_low_340
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_340 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 51254309 - 51254534
Alignment:
| Q |
15 |
ctacatttcaagggttaccgttaagacaatccccgtacgaagccctatccaatgccattccgatgaatcccttccaatcctcaccggagccatgcaactg |
114 |
Q |
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| T |
51254309 |
ctacatttctagggttaccgttaagacaatccacgtacgaagccctatccaatgccattccgatgaatcccttccaatcctcaccggagccatgcgactg |
51254408 |
T |
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| Q |
115 |
ttgcggcttcacaccgacaacctctctcttcctccacactatcacctacagagccatcaaccgtcgtttctgcacaaactgcgttctcaaacaacaacaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51254409 |
ttgcggcttcacaccgacaacctctctcttcctccacactatcacctacagagccatcaaccgtcgtttctgcacaaactgcgttctcaaacaacaacaa |
51254508 |
T |
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| Q |
215 |
ggcactttttgccctatattcttcga |
240 |
Q |
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||||||||||||||||| | |||||| |
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| T |
51254509 |
ggcactttttgccctatttgcttcga |
51254534 |
T |
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Target: scaffold0246 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 11764 - 11863
Alignment:
| Q |
133 |
aacctctctcttcctccacactatcacctacagagccatcaaccgt-cgtttctgcacaaactgcgttctcaaacaacaacaaggcactttttgccctat |
231 |
Q |
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|||||||||| |||||||| | |||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
11764 |
aacctctctcatcctccacgccatcaccaacagagccatcaaatgttcgtttctgcacaaattgcgttctcaaacaacaacaaggcacttctttccctat |
11863 |
T |
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