View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_343 (Length: 246)
Name: NF11982A_low_343
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_343 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 25802075 - 25801903
Alignment:
| Q |
19 |
gtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctgtttgtttgtgtgatattgcatatgtaatggtaactgttgt |
118 |
Q |
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| T |
25802075 |
gtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctttttgtttgtgtgatattgcatatgtaatggtaactgttgt |
25801976 |
T |
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| Q |
119 |
tatgtatttataattggaaggggcgtgatttggacttgtgctggtttgtgggtaattaggtaatttgaaagtg |
191 |
Q |
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| T |
25801975 |
tatgtatttataattggaaggggcatgatttggacttgtgctggtttgagggtaattaggtaatttgaaagtg |
25801903 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 25816168 - 25816102
Alignment:
| Q |
19 |
gtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctgtttgttt |
85 |
Q |
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| T |
25816168 |
gtgttttgggtggctgaaatgtgatatctcgttgtatttcattgttctgtttcttctctatttgttt |
25816102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 112456 - 112617
Alignment:
| Q |
19 |
gtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctgtttgtttgtgtgatattgcatatgtaatggtaactgttgt |
118 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
112456 |
gtgttttgggtggctgaaatgtgatatctcactgtatttcattgttctg-----------tttgtttgtgtgatattgcatatgtaatggtaactgttgt |
112544 |
T |
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| Q |
119 |
tatgtatttataattggaaggggcgtgatttggacttgtgctggtttgtgggtaattaggtaatttgaaagtg |
191 |
Q |
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| T |
112545 |
tatgtatttataattggaaggggcgtgatttggacttgtgttggtttgagggtaattaagtaatttgaaagtg |
112617 |
T |
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