View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_346 (Length: 245)
Name: NF11982A_low_346
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_346 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44952172 - 44951938
Alignment:
| Q |
1 |
gaaatggaagtatcaagtgaacatgcgtgttccgaagtaaatgtgtatttgataaatgtgcaatatgtatatcttaaatgaatcttacttctctatacac |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44952172 |
gaaatagaagtatcaagtgaacatgcgtgtttctaagtaaatgtgtatttgataaatgtgcaatatgtatatcttaagtgaatcttacttctctatacac |
44952073 |
T |
|
| Q |
101 |
gatgggtcctataacatacgactaccataaatcctttatttttatgtatacttcttagtatttgtcttgattttttattataaaccatgtaactcagcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44952072 |
gatgggtcctataacatacgactaccataaatcatttatttttatgtatacttcttagtatttgtcttgattttttattatacaccatgtaactcagcca |
44951973 |
T |
|
| Q |
201 |
ttcacccttcgttaacttagcactttaaatgttca |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44951972 |
ttcacccttcgttaacttagcactttaaatgttca |
44951938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University