View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_347 (Length: 245)
Name: NF11982A_low_347
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_347 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 38930669 - 38930797
Alignment:
| Q |
105 |
tgtaattaatactttgttctttatgtacacacttcttgtgcataggagaacatttgtgtggttaatatattttattttggtttattnnnnnnnntaatat |
204 |
Q |
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| T |
38930669 |
tgtaattaatactttgttctttatgtacacacttcttgtgcataggagaacatttgtgtggttaatatattttattttggtttattaaaaaaaaaaatat |
38930768 |
T |
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| Q |
205 |
aggcttagtatacaaccttaaccttgatg |
233 |
Q |
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| T |
38930769 |
aggcttagtatacaaccttaaccttgatg |
38930797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38930193 - 38930295
Alignment:
| Q |
1 |
ggacaacacattttcaccaaaatcttaaagcatcgatagagtatacaaatcctctcaagtatgtggaactaaacatttttatcaaaagcagaactcttat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38930193 |
ggacaacacattttcaccaaaatcttaaagtatcgatagagtatacgaatcctctcaagcatgtggaactaaacatttttatcaaaagcagaactcttat |
38930292 |
T |
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| Q |
101 |
tta |
103 |
Q |
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||| |
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| T |
38930293 |
tta |
38930295 |
T |
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