View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_350 (Length: 244)
Name: NF11982A_low_350
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_350 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 1026 - 821
Alignment:
| Q |
22 |
gaggaagatttacctataaaatgcccttgcatacaagtcatccaagtcaagtaactgtaactgttaggaaccaatcaaatccaataattcacattgtgaa |
121 |
Q |
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| T |
1026 |
gaggaagatttacctataaaatgcccttgcatacaagtcatccaagtcaagtaactgtaactgttaggaaccaatcaaatccaataattcacattgtgaa |
927 |
T |
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| Q |
122 |
gtccatttgattgattaaacagttcattagtaatatgttttggtgctttgagaatatttaatggagcaaaaattgatttcataattaattttggttctat |
221 |
Q |
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| T |
926 |
gtccatttgattgattaaacagttcattagtaatatgttttggtgctttgagaatatttaatggagcaaaaattgatttcataattaatttttgttctgt |
827 |
T |
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| Q |
222 |
gatact |
227 |
Q |
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|||||| |
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| T |
826 |
gatact |
821 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
| Q |
100 |
atccaataattcacattgtgaagtccatttgattgattaaacagttcatta |
150 |
Q |
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| T |
21249511 |
atccaataattcacattgtgcagtccacttaattgattaaacggttcatta |
21249561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 21184102 - 21184041
Alignment:
| Q |
106 |
taattcacattgtgaagtccatttgattgattaaacagttcattagtaatatgttttggtgc |
167 |
Q |
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| T |
21184102 |
taattcacattgtgatgtccaatttattggttaaatggttcattaataatattttttggtgc |
21184041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 21221080 - 21221016
Alignment:
| Q |
103 |
caataattcacattgtgaagtccatttgattgattaaacagttcattagtaatatgttttggtgc |
167 |
Q |
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| T |
21221080 |
caataattcacattgtgctgttcacttcatcgattaaacaattcattagtaataatttttggtgc |
21221016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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