View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_353 (Length: 244)

Name: NF11982A_low_353
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_353
NF11982A_low_353
[»] chr4 (12 HSPs)
chr4 (48-165)||(46550706-46550823)
chr4 (58-165)||(17056615-17056722)
chr4 (51-165)||(47541809-47541925)
chr4 (58-165)||(41464802-41464911)
chr4 (58-165)||(52920087-52920197)
chr4 (63-158)||(15827131-15827229)
chr4 (67-165)||(47833504-47833603)
chr4 (57-165)||(36364868-36364972)
chr4 (58-165)||(39503504-39503615)
chr4 (58-165)||(20679841-20679951)
chr4 (70-155)||(46381481-46381568)
chr4 (93-165)||(42969971-42970043)
[»] chr1 (10 HSPs)
chr1 (58-165)||(16253029-16253136)
chr1 (58-165)||(24241478-24241585)
chr1 (58-165)||(41942781-41942888)
chr1 (58-165)||(21356794-21356901)
chr1 (58-165)||(34773420-34773528)
chr1 (58-165)||(39744169-39744276)
chr1 (52-156)||(38746028-38746133)
chr1 (58-165)||(2344969-2345077)
chr1 (58-136)||(48503922-48504000)
chr1 (58-160)||(7101359-7101464)
[»] chr3 (9 HSPs)
chr3 (58-165)||(44880254-44880361)
chr3 (54-165)||(1994850-1994961)
chr3 (58-165)||(22220210-22220318)
chr3 (59-165)||(2008400-2008508)
chr3 (53-165)||(22831174-22831286)
chr3 (58-165)||(39056875-39056981)
chr3 (58-134)||(26466362-26466438)
chr3 (78-165)||(28297695-28297782)
chr3 (58-115)||(45805583-45805640)
[»] chr7 (8 HSPs)
chr7 (54-165)||(8541427-8541539)
chr7 (58-165)||(34998528-34998637)
chr7 (58-165)||(10544991-10545100)
chr7 (58-137)||(39187986-39188065)
chr7 (58-165)||(45627414-45627524)
chr7 (63-115)||(32676800-32676852)
chr7 (48-104)||(15878797-15878853)
chr7 (106-165)||(40076693-40076753)
[»] chr8 (11 HSPs)
chr8 (54-165)||(42056676-42056787)
chr8 (46-165)||(30208187-30208307)
chr8 (54-153)||(39402038-39402140)
chr8 (53-165)||(5594779-5594891)
chr8 (59-165)||(1162117-1162222)
chr8 (58-165)||(40719895-40720005)
chr8 (53-165)||(35179155-35179268)
chr8 (55-165)||(31333162-31333273)
chr8 (76-165)||(42921385-42921474)
chr8 (102-165)||(30362018-30362082)
chr8 (58-158)||(36132676-36132776)
[»] chr5 (12 HSPs)
chr5 (58-165)||(33758794-33758901)
chr5 (77-159)||(23151436-23151518)
chr5 (53-165)||(2976446-2976556)
chr5 (67-165)||(34849451-34849550)
chr5 (68-165)||(30319817-30319915)
chr5 (58-165)||(20524604-20524711)
chr5 (58-165)||(10719746-10719854)
chr5 (78-165)||(37872201-37872291)
chr5 (55-95)||(37872302-37872342)
chr5 (51-163)||(8026460-8026577)
chr5 (66-165)||(3454259-3454358)
chr5 (107-165)||(42285218-42285277)
[»] chr2 (10 HSPs)
chr2 (58-165)||(3870024-3870135)
chr2 (58-165)||(11028779-11028887)
chr2 (58-151)||(36400857-36400952)
chr2 (52-165)||(28734070-28734183)
chr2 (58-165)||(37721449-37721557)
chr2 (58-165)||(38879517-38879625)
chr2 (58-165)||(3647418-3647526)
chr2 (59-165)||(30706149-30706258)
chr2 (58-165)||(6512079-6512191)
chr2 (104-165)||(3949317-3949378)
[»] scaffold0095 (1 HSPs)
scaffold0095 (54-153)||(35362-35464)
[»] chr6 (3 HSPs)
chr6 (58-165)||(2141240-2141348)
chr6 (53-165)||(7080148-7080262)
chr6 (58-152)||(25336928-25337023)
[»] scaffold0288 (1 HSPs)
scaffold0288 (58-137)||(18084-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (50-137)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (58-165)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 46550823 - 46550706
Alignment:
Q  48 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatc 147  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46550823 aataatgaaatattcttccatggtcacaagaccaaatcaataatgtttaaacacatacataaaaagattctcctctaaatattcaatcatcatttttatc 46550724  T
Q  148 aatttcctctttattatt 165  Q
    ||||| ||||||||||||    
T  46550723 aattttctctttattatt 46550706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 17056615 - 17056722
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata-aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 156  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||  ||||||| ||||||  |||||||||||||||||    
T  17056615 tattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataaaaaattgtccttaaaatatttaatcat-ttttttatcaatttcctc 17056713  T
Q  157 tttattatt 165  Q
    |||||||||    
T  17056714 tttattatt 17056722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 47541925 - 47541809
Alignment:
Q  51 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatca 148  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||| | |||||||  |||||||||| ||||| ||||||||||||||| |||||||||    
T  47541925 aaggagatattctttcatgatcacaagatcaaatcaataatatttggacacacacacataaaaagattttcctcaaaatattcaatcatcttttttatca 47541826  T
Q  149 atttcctctttattatt 165  Q
    |||||||  ||||||||    
T  47541825 atttccttcttattatt 47541809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 41464911 - 41464802
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 155  Q
    ||||||| ||||||||||||| ||||||||||||  || ||  ||||||||||||||||||||| || ||||| ||||||||| |||||||||||||| |    
T  41464911 tattctttcatggtcacaagatcaaatcaataatacttaaacatacacacataaaaagattctcttcaaaatactcaatcatcttttttatcaatttctt 41464812  T
Q  156 ctttattatt 165  Q
    ||||||||||    
T  41464811 ctttattatt 41464802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 52920197 - 52920087
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcattttt-atcaatttcc 154  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | |  ||||||||||  | |  ||||||||||||||  ||||| |||||||| |    
T  52920197 tattcttccatggtcacaagaccaaatcaataatgtttaaatacatataaataaaaagatttacttaaaaatattcaatcatttttttttatcaattttc 52920098  T
Q  155 tctttattatt 165  Q
    |||||||||||    
T  52920097 tctttattatt 52920087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 15827229 - 15827131
Alignment:
Q  63 ttccatggtcacaagaccaaatcaataatgtttgaataca--cacataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctt 158  Q
    |||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||  || ||||||||||| ||  ||||| |||||||| |||||    
T  15827229 ttccatggtcacaagaccgaatcaataatatttgaatacacacacataaaaagattcttgtcaaaatattcaattattttttttcatcaattttctctt 15827131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 47833504 - 47833603
Alignment:
Q  67 atggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattat 164  Q
    |||||| |||||||||||| ||| || ||| |  ||||||||||||||||   ||||| |||||||||||||| | ||||||||||||||||||||||||    
T  47833504 atggtcgcaagaccaaatctatagtggttggacatacacacataaaaagaccatcctcaaaatattcaatcatta-ttttatcaatttcctctttattat 47833602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 36364972 - 36364868
Alignment:
Q  57 atattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 156  Q
    ||||| || ||||||| ||||||||||||||||||||||| | ||||| ||||||| ||  ||||  ||||||    |||| |||||||||||||| |||    
T  36364972 atattgttgcatggtcgcaagaccaaatcaataatgtttggacacacatataaaaatatggtccttaaaatat----tcattatttttatcaattttctc 36364877  T
Q  157 tttattatt 165  Q
    |||| ||||    
T  36364876 tttactatt 36364868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 39503615 - 39503504
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaa--tcatcatttttatcaatttc 153  Q
    |||||||| ||||||||||||| ||||||||| |||||||| ||  ||||||||||||||  || |  ||||||| ||  |  |  ||||||||||||||    
T  39503615 tattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaatttc 39503516  T
Q  154 ctctttattatt 165  Q
    ||||||||||||    
T  39503515 ctctttattatt 39503504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 20679951 - 20679841
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata---aaaagattctcctctaaatattcaatcatcatttttatcaatttcc 154  Q
    ||||||| ||||||| ||||| |||||||||| |||||| | ||||||| |   |||| ||  || |  ||||||||||| ||  |||||||||||||||    
T  20679951 tattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataaaaaaaatggtctttaaaatattcaattattttttttatcaatttcc 20679852  T
Q  155 tctttattatt 165  Q
    |||||||||||    
T  20679851 tctttattatt 20679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 46381481 - 46381568
Alignment:
Q  70 gtcacaagaccaaatcaataatgtttgaatacaca--cataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 155  Q
    ||||||||||||||| |||| |||||||  |||||  |||||| ||||| ||||  ||| ||||||||||  ||||||||||||||||    
T  46381481 gtcacaagaccaaataaatagtgtttgagcacacatacataaagagattatcctaaaaacattcaatcattttttttatcaatttcct 46381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 42969971 - 42970043
Alignment:
Q  93 tttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 165  Q
    |||||| ||||  ||||||||||| ||||  |||||||||||| |  |||||||||||||  |||||||||||    
T  42969971 tttgaacacacgtataaaaagattatccttaaaatattcaatctttttttttatcaattttatctttattatt 42970043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 16253029 - 16253136
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  16253029 tattcttccatgttcacaagaccaaatcaataatgtttggagacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 16253128  T
Q  158 ttattatt 165  Q
    ||||||||    
T  16253129 ttattatt 16253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 24241478 - 24241585
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  24241478 tattcttccatggtcacatgaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 24241577  T
Q  158 ttattatt 165  Q
    ||||||||    
T  24241578 ttattatt 24241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 41942781 - 41942888
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||     
T  41942781 tattctttcatggtcacaagaccaaatcaataatgtttggacacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcctcc 41942880  T
Q  158 ttattatt 165  Q
    ||||||||    
T  41942881 ttattatt 41942888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 21356794 - 21356901
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||| ||||||||||||| |||     
T  21356794 tattcttttatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaattttctca 21356893  T
Q  158 ttattatt 165  Q
    ||||||||    
T  21356894 ttattatt 21356901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 34773528 - 34773420
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 155  Q
    |||||||||||| |||||||||||| ||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  34773528 tattcttccatgatcacaagaccaactcaataatgtttgcacatacacacataaaaagattctcctcaaaatattcaatcatattttttattaatttcct 34773429  T
Q  156 ctttattatt 165  Q
     |||||||||    
T  34773428 -tttattatt 34773420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 39744276 - 39744169
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||  |||| ||||||||  ||||||||| |||||||     
T  39744276 tattcttctatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattcttctcagaatagtcaatcattttttttatcattttcctcc 39744177  T
Q  158 ttattatt 165  Q
    ||||||||    
T  39744176 ttattatt 39744169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 38746133 - 38746028
Alignment:
Q  52 aggagatattcttccatggtcacaagaccaaatcaataatgtttga-atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaat 150  Q
    |||||| |||||||||| |||||||||||||||||||||| || || | |||| |||||| ||||||||||| ||||||||||||||| || || |||||    
T  38746133 aggagacattcttccatcgtcacaagaccaaatcaataattttggacacacacccataaatagattctcctcaaaatattcaatcatctttgttttcaat 38746034  T
Q  151 ttcctc 156  Q
    ||||||    
T  38746033 ttcctc 38746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 2344969 - 2345077
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 155  Q
    ||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||| || |  ||| ||||||||||| ||||||||||||||||    
T  2344969 tattcttccttggtcacaagaccaaatcaataatgtttggataagcacacataaaaa-attttctttaaaaaattcaatcatcttttttatcaatttcct 2345067  T
Q  156 ctttattatt 165  Q
    | || |||||    
T  2345068 ccttcttatt 2345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 48503922 - 48504000
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca 136  Q
    |||||||||||| ||| ||||||||||||||||| |||| | ||||| |||||| ||||||| || ||||| |||||||    
T  48503922 tattcttccatgttcataagaccaaatcaataatatttggacacacatataaaaggattctcatcaaaatactcaatca 48504000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 7101464 - 7101359
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttga----atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 153  Q
    |||||| ||||| ||| ||||||||||||||| |||| ||    | ||||||||||||||||  ||||  ||||||||||||||   |||||||||||||    
T  7101464 tattctcccatgatcataagaccaaatcaatagtgttggaacatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 7101366  T
Q  154 ctcttta 160  Q
    |||||||    
T  7101365 ctcttta 7101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 44880254 - 44880361
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||     
T  44880254 tattctttcatggtcacaagaccaaatcaataatgtttgaacacacacataaaacgattctcctcaaaatattcagtcatcttttttatcaatttcctcc 44880353  T
Q  158 ttattatt 165  Q
    ||||||||    
T  44880354 ttattatt 44880361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 1994961 - 1994850
Alignment:
Q  54 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 153  Q
    |||||||||| | |||||||||||||||||||||||||||||| | | ||||| ||||||||||||||  ||||||||||||||| |||||||||||| |    
T  1994961 gagatattctactatggtcacaagaccaaatcaataatgtttggacaaacacacaaaaagattctcctgaaaatattcaatcatcttttttatcaattac 1994862  T
Q  154 ctctttattatt 165  Q
    ||||||||||||    
T  1994861 ctctttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 22220210 - 22220318
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 156  Q
    |||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||    
T  22220210 tattcttccatggtcaaaagatcaaatcaataatgtttgtacacacacataaaaagattcttctcaaaatattcaatcatctttttttatcaatttcctc 22220309  T
Q  157 tttattatt 165  Q
     ||||||||    
T  22220310 cttattatt 22220318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 2008400 - 2008508
Alignment:
Q  59 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 156  Q
    ||||||||||| ||||||||||||||||||||| |||| | |||||||||  |||||||||||||| ||||||||||||||| ||||||||||||| |||    
T  2008400 attcttccatgatcacaagaccaaatcaataatatttggacacacacatataaaaagattctcctcaaaatattcaatcatcttttttatcaattttctc 2008499  T
Q  157 tttattatt 165  Q
     ||||||||    
T  2008500 cttattatt 2008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 22831286 - 22831174
Alignment:
Q  53 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 152  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  22831286 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 22831187  T
Q  153 cctctttattatt 165  Q
    |||| ||||||||    
T  22831186 cctccttattatt 22831174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 39056981 - 39056875
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    |||||||||||| || |||||||||||| |||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| |||     
T  39056981 tattcttccatgatcgcaagaccaaatctataatgtttggacacacacataaaaagattttcctcaaaatattcaatcatc-tttttatcgattttctcc 39056883  T
Q  158 ttattatt 165  Q
    ||| ||||    
T  39056882 ttaatatt 39056875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 26466438 - 26466362
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaat 134  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||| | |||||||||||||  |  |||||||||||    
T  26466438 tattcttccatggtcacaagatcaaattaataatgtttgaacacatatataaaaagattctttttaaaatattcaat 26466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 28297695 - 28297782
Alignment:
Q  78 accaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 165  Q
    ||||||||||||| ||||| | | | | ||||||||||||||||  | |||||| |||||   |||||||||||||||||||||||||    
T  28297695 accaaatcaataaagtttggacatatatataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattatt 28297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 45805640 - 45805583
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 115  Q
    |||||||||||| | |||||| |||||||||| |||||| | ||||||||||||||||    
T  45805640 tattcttccatgattacaagatcaaatcaatagtgtttgcacacacacataaaaagat 45805583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 8541427 - 8541539
Alignment:
Q  54 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatca-tttttatcaattt 152  Q
    |||||||||||  |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | |||||||||||||    
T  8541427 gagatattcttttatggtcacaagaccaaatcaataatgtttgaacacacacgtaaaaagattctcctcaaaatattcaatcattattttttatcaattt 8541526  T
Q  153 cctctttattatt 165  Q
    |||| ||||||||    
T  8541527 cctccttattatt 8541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 34998528 - 34998637
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcct 155  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||||||||||| |||||||||||||| |||||||||||||| ||    
T  34998528 tattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataaaaagattctcctcaaaatattcaatcattatttttatcaattttct 34998627  T
Q  156 ctttattatt 165  Q
    | ||||||||    
T  34998628 ccttattatt 34998637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 10544991 - 10545100
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatt--tttatcaatttcct 155  Q
    |||||||||| | |||||||||| |||||||| | |||| | ||||||||||||||||| |  |  ||||||||||||||  ||  ||||||||||||||    
T  10544991 tattcttccacgatcacaagaccgaatcaatagtatttggagacacacataaaaagattatttttaaaatattcaatcattttttatttatcaatttcct 10545090  T
Q  156 ctttattatt 165  Q
    ||||||||||    
T  10545091 ctttattatt 10545100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 39188065 - 39187986
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 137  Q
    |||||||||||||||| ||||||||||||||| | |||| | |||| |||||||||||  ||||  ||||||||||||||    
T  39188065 tattcttccatggtcagaagaccaaatcaatagtatttggacacacgcataaaaagatggtccttaaaatattcaatcat 39187986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 45627524 - 45627414
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatg-tttga-atacacacat-aaaaagattctcctctaaatattcaatcatcatttttatcaatttcc 154  Q
    |||||||||||||||||| ||||||||||||| || ||||| | |||||||| ||||| ||| ||||  ||||||| ||||||  |||||||||||||||    
T  45627524 tattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataaaaaaaattgtccttaaaatatttaatcattttttttatcaatttcc 45627425  T
Q  155 tctttattatt 165  Q
    | | |||||||    
T  45627424 tttatattatt 45627414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 32676800 - 32676852
Alignment:
Q  63 ttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||  |||||||||    
T  32676800 ttccatggtcacaagaccaaatcaatagtgtttggatacacatgtaaaaagat 32676852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 15878853 - 15878797
Alignment:
Q  48 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacaca 104  Q
    ||||| |||||||||||| || ||||||||||||||||||||  ||||| |||||||    
T  15878853 aataaagagatattcttctattgtcacaagaccaaatcaatagcgtttggatacaca 15878797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 40076753 - 40076693
Alignment:
Q  106 ataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctttattatt 165  Q
    |||||||||||||  |  ||||||||||||||| ||||| |||||||||||| ||||||||    
T  40076753 ataaaaagattcttttaaaaatattcaatcatctttttttatcaatttcctccttattatt 40076693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 42056676 - 42056787
Alignment:
Q  54 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |  ||||||||||||||| |||||||||||||     
T  42056676 gagatattcttccatggtcacaagaccaaatcaataatgtttggacacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaatttt 42056775  T
Q  154 ctctttattatt 165  Q
    ||| ||||||||    
T  42056776 ctccttattatt 42056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 30208187 - 30208307
Alignment:
Q  46 agaataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttt 143  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||| | ||  | ||||||||||||||||||| ||||||||||||||| ||||    
T  30208187 agaatatggaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataaaaagattctcctc-aaatattcaatcatcttttt 30208285  T
Q  144 tatcaatttcctctttattatt 165  Q
    ||||||||||||| ||||||||    
T  30208286 tatcaatttcctccttattatt 30208307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 39402140 - 39402038
Alignment:
Q  54 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 150  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  39402140 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 39402041  T
Q  151 ttc 153  Q
    |||    
T  39402040 ttc 39402038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 5594779 - 5594891
Alignment:
Q  53 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 152  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  5594779 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 5594878  T
Q  153 cctctttattatt 165  Q
    |||| ||||||||    
T  5594879 cctccttattatt 5594891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 1162222 - 1162117
Alignment:
Q  59 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctt 158  Q
    |||| |||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||||||||  || || ||||||||||||||||    
T  1162222 attcgtccatgatcacaagaccaaatcagtaatatttgaacacacacataaaaggattctcctcaaaatattcaat-gtctttcttatcaatttcctctt 1162124  T
Q  159 tattatt 165  Q
    |||||||    
T  1162123 tattatt 1162117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 40720005 - 40719895
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcc 154  Q
    |||||||||||||||| ||||  |||| ||||||||||| | |||||||  |||||||||||||||| |||||||||||||||  |||||||||||||||    
T  40720005 tattcttccatggtcaaaagattaaattaataatgtttggacacacacacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttcc 40719906  T
Q  155 tctttattatt 165  Q
    || ||||||||    
T  40719905 tccttattatt 40719895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 35179155 - 35179268
Alignment:
Q  53 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatt 151  Q
    |||| ||||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||||| ||| ||||||||||| | |  ||||||||||||    
T  35179155 ggaggtattctttcatggtcataagaccaaatcaataatgtttggacacacatataaaaagattcttctcaaaatattcaataatttttttttatcaatt 35179254  T
Q  152 tcctctttattatt 165  Q
    ||||  ||||||||    
T  35179255 tccttcttattatt 35179268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 31333273 - 31333162
Alignment:
Q  55 agatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatcaattt 152  Q
    |||||||||||||| |||||||||||||||||| ||||||||  ||||||||  |||||||||| | ||  ||||||||||||||| ||||||||| |||    
T  31333273 agatattcttccatagtcacaagaccaaatcaa-aatgtttggttacacacacataaaaagattttacttaaaatattcaatcatcttttttatcagttt 31333175  T
Q  153 cctctttattatt 165  Q
     ||| ||||||||    
T  31333174 tctccttattatt 31333162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 42921385 - 42921474
Alignment:
Q  76 agaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 165  Q
    ||||||||| ||||||||||||| ||| | ||||||||||||| ||| ||||| ||||||||| |||||||||||||| || ||||||||    
T  42921385 agaccaaattaataatgtttgaacacaaatataaaaagattcttctcaaaataatcaatcatcttttttatcaatttcatccttattatt 42921474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 30362082 - 30362018
Alignment:
Q  102 acacataaaaagattctcctctaaatattcaatcatca-tttttatcaatttcctctttattatt 165  Q
    ||||||||||| ||||||||| ||||||||||| || | |||||||||||||| || ||||||||    
T  30362082 acacataaaaaaattctcctcaaaatattcaattattattttttatcaatttcgtccttattatt 30362018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 36132676 - 36132776
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    |||||||| || |||||||||| |||| |||| | |||| ||||||||||||||||||  |  |  ||||||| ||||||  ||||||| ||||||||||    
T  36132676 tattcttctatagtcacaagactaaattaatagtatttggatacacacataaaaagatggtttttaaaatatttaatcattttttttattaatttcctct 36132775  T
Q  158 t 158  Q
    |    
T  36132776 t 36132776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 33758794 - 33758901
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    ||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |    
T  33758794 tattcttccatggtcacaagatcaaatcaatactgtttggacacacacataaaaagattctcctcaaactattcaatcatcttttttatcaatttccttt 33758893  T
Q  158 ttattatt 165  Q
    ||||||||    
T  33758894 ttattatt 33758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 23151518 - 23151436
Alignment:
Q  77 gaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctcttt 159  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  23151518 gaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttcttcttt 23151436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 2976556 - 2976446
Alignment:
Q  53 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 152  Q
    |||| |||||||||||||||| ||||||||||||||| |||||| |  |||||||||||||||  ||||  ||||||||||||||  |||||||||||||    
T  2976556 ggaggtattcttccatggtcataagaccaaatcaatagtgtttgga--cacacataaaaagatggtccttaaaatattcaatcattttttttatcaattt 2976459  T
Q  153 cctctttattatt 165  Q
    | |||||| ||||    
T  2976458 cttctttaatatt 2976446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 34849451 - 34849550
Alignment:
Q  67 atggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 165  Q
    ||||||| ||||| |||||||||||||||  | ||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||||    
T  34849451 atggtcataagacgaaatcaataatgtttcgacacacatataaaaagattctcctcaaaatattcaatcatctttttttatcaattttctccttattatt 34849550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 30319817 - 30319915
Alignment:
Q  68 tggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 165  Q
    ||||||||||||||||||||||||||||| |||  | |||||||||| |||||| |  ||||||||||||||| ||||||||||||||||| || |||||    
T  30319817 tggtcacaagaccaaatcaataatgtttggatacgcgcacataaaaa-attctctttaaaatattcaatcatcttttttatcaatttcctccttcttatt 30319915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 20524711 - 20524604
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 157  Q
    |||||||||||| |||||| || ||||||||| |||||| | |||||||| |||||||  |  |  ||||||||||||||  ||||||||||||||||||    
T  20524711 tattcttccatgatcacaaaactaaatcaatactgtttggacacacacatcaaaagatgatgtttaaaatattcaatcattttttttatcaatttcctct 20524612  T
Q  158 ttattatt 165  Q
    ||||||||    
T  20524611 ttattatt 20524604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 10719746 - 10719854
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 156  Q
    |||||||||||||||| |||||||||| |||| |||||| | ||||||||||||| ||  ||||  ||||||||||||| |  ||||||||||||| |||    
T  10719746 tattcttccatggtcataagaccaaattaatagtgtttggacacacacataaaaaaatggtccttaaaatattcaatcatttttttttatcaattttctc 10719845  T
Q  157 tttattatt 165  Q
    |||| ||||    
T  10719846 tttactatt 10719854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 37872291 - 37872201
Alignment:
Q  78 accaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 165  Q
    |||||||||||||| |||| | |||||||  ||||||||||||| || |||||||||||||||  ||||||||||||||||| ||||||||    
T  37872291 accaaatcaataatatttggacacacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattatt 37872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 37872342 - 37872302
Alignment:
Q  55 agatattcttccatggtcacaagaccaaatcaataatgttt 95  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872342 agatattcttccatggtcacaagaccaaatcaataatgttt 37872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 8026460 - 8026577
Alignment:
Q  51 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttt---ta 145  Q
    |||||| |||||||| || |||||||||||||||||||| |||||| |   | ||||||||||||||  || |  ||||||||||||||  ||||   ||    
T  8026460 aaggaggtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataaaaagatggtctttaaaatattcaatcatttttttttata 8026559  T
Q  146 tcaatttcctctttatta 163  Q
    ||||||||||||||||||    
T  8026560 tcaatttcctctttatta 8026577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 3454259 - 3454358
Alignment:
Q  66 catggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 165  Q
    |||||| |||||| |||||||||||| |||    ||| | ||| ||||||||| ||  ||||||||||||||| |||||||||||||| | |||||||||    
T  3454259 catggttacaagatcaaatcaataatatttagtcacaaatatataaagattcttcttaaaatattcaatcatcttttttatcaatttcttttttattatt 3454358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 42285218 - 42285277
Alignment:
Q  107 taaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctctttattatt 165  Q
    |||||||||||||||| ||||||||||||| |  ||||||||||||||||| ||||||||    
T  42285218 taaaaagattctcctcaaaatattcaatcatttttttttatcaatttcctccttattatt 42285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 3870024 - 3870135
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca----taaaaagattctcctctaaatattcaatcatcatttttatcaatttc 153  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  3870024 tattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 3870123  T
Q  154 ctctttattatt 165  Q
    ||| ||||||||    
T  3870124 ctccttattatt 3870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 11028779 - 11028887
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 156  Q
    ||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||    
T  11028779 tattcttccatcgtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctccttaaaatattcaatcatctttttttatcaatttcctc 11028878  T
Q  157 tttattatt 165  Q
     ||||||||    
T  11028879 cttattatt 11028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 58 - 151
Target Start/End: Original strand, 36400857 - 36400952
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatt 151  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 36400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 28734183 - 28734070
Alignment:
Q  52 aggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 150  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||| |||||  |||||||||||    
T  28734183 aggaggtattcttccacggtcacaagaccaaatcaataatgtttggacacacacataaaaa-attctcctcaaaatactcactcatctttttttatcaat 28734085  T
Q  151 ttcctctttattatt 165  Q
    ||| |||||||||||    
T  28734084 ttcttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 37721449 - 37721557
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 156  Q
    |||||||||||||||||||||||||||||||||| |||| | || | ||||||||||||||| || ||||||||||||| |  |||||||||||||||||    
T  37721449 tattcttccatggtcacaagaccaaatcaataatatttggacacgcgcataaaaagattctcttcaaaatattcaatcatttttttttatcaatttcctc 37721548  T
Q  157 tttattatt 165  Q
     ||||||||    
T  37721549 cttattatt 37721557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 38879517 - 38879625
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 156  Q
    ||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| |||||||  ||||||||||||| |||    
T  38879517 tattcttccatagtcacaagaccaaattaataatgtttggacacacacataaaaagattctcctcaaaatattaaatcatctttttttatcaattttctc 38879616  T
Q  157 tttattatt 165  Q
     | ||||||    
T  38879617 ctcattatt 38879625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 3647418 - 3647526
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 155  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||| |  ||||||||||||||| ||||||||||||| ||    
T  3647418 tattcttccttggtcacaagaccaaatcaataatgtttgaacacgaacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattttct 3647516  T
Q  156 ctttattatt 165  Q
    | || |||||    
T  3647517 ccttcttatt 3647526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 30706258 - 30706149
Alignment:
Q  59 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-----tcatttttatcaatttc 153  Q
    |||||| |||||||||||||||||||||||| ||||||   ||||||||||||||||  ||||  |||||||||||||     |  ||||||||||||||    
T  30706258 attcttacatggtcacaagaccaaatcaatagtgtttg--gacacacataaaaagatggtccttaaaatattcaatcatttttttttttttatcaatttc 30706161  T
Q  154 ctctttattatt 165  Q
    ||||||| ||||    
T  30706160 ctctttactatt 30706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 6512191 - 6512079
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttg--aatacacacataaaaagattctcctct-aaatattcaatca---tcatttttatcaatt 151  Q
    |||| ||||||||||||||||||||||||||| ||||||   | ||||||||||||||| |   |||| |||||||||||||   |  ||||||||||||    
T  6512191 tattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataaaaaga-tgaactctaaaatattcaatcatttttttttttatcaatt 6512093  T
Q  152 tcctctttattatt 165  Q
    ||||||||||||||    
T  6512092 tcctctttattatt 6512079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 3949378 - 3949317
Alignment:
Q  104 acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 165  Q
    |||||||||  |||||||| ||||||||||||||  |||||||||||||| | |||||||||    
T  3949378 acataaaaaatttctcctcaaaatattcaatcattttttttatcaatttcttttttattatt 3949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 35362 - 35464
Alignment:
Q  54 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 150  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  35362 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 35461  T
Q  151 ttc 153  Q
    |||    
T  35462 ttc 35464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 2141348 - 2141240
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 156  Q
    ||||||||||||||||||||| || |||||||| ||||| | || |||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||    
T  2141348 tattcttccatggtcacaagatcatatcaataacgtttggacacccacataaaaagatttttctcaaaatattcaatcatctatttttatcaatttcctc 2141249  T
Q  157 tttattatt 165  Q
     ||||||||    
T  2141248 attattatt 2141240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 7080148 - 7080262
Alignment:
Q  53 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaat 150  Q
    |||| |||||||| ||||||||| |||||||||||||||||||| | ||||  |||||||||||||||| || ||||||||||| ||| |||||||||||    
T  7080148 ggaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataaaaagattctcttcaaaatattcaataatcttttttatcaat 7080247  T
Q  151 ttcctctttattatt 165  Q
    ||| |||||| ||||    
T  7080248 ttcgtctttaatatt 7080262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 25337023 - 25336928
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 152  Q
    ||||||||| ||||||||||| ||||||||||||||||| | |  |||||||||||| |||||| |  ||||||||||||||| |||||||||||||    
T  25337023 tattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattt 25336928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 18163 - 18084
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 137  Q
    |||||||||||||| |||||| | ||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  18163 tattcttccatggttacaagatccaatcaataatgtttgaacacacatagaaaaagattctcctcaaaatattcaatcat 18084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 25680 - 25767
Alignment:
Q  50 taaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 137  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||| | |||||| |||||||||| || || ||||||||||||||    
T  25680 taaggaggtattcttccatgatcacgagaccaaatcaataatgtttggacacacacgtaaaaagattttcatcaaaatattcaatcat 25767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 165 - 57
Alignment:
Q  58 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 155  Q
    |||||||||||| ||||||||||||||||||| |||||| | ||||  ||||||||||||  || |  ||||||||||||||  |||||||||||||| |    
T  165 tattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatcat-ttttttatcaatttcat 67  T
Q  156 ctttattatt 165  Q
    ||||||||||    
T  66 ctttattatt 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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