View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_354 (Length: 244)
Name: NF11982A_low_354
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_354 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 32195903 - 32195677
Alignment:
| Q |
20 |
atttttacattcacaaaagtgaaattactgatttattagaatgtatcaaaaagtttttgagaaataatcatttaatttcagttggtgaagaatataatgc |
119 |
Q |
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| T |
32195903 |
atttttacattcacaaaagtgaaattattgatttattagaatgtatcaaaaagtttttgagaaataatcatttaatttcagttggtgaagaatataatgc |
32195804 |
T |
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| Q |
120 |
acgacaacttttagtccaagaaaaatcaatcgtgtaataaaaagcaagtcatgtagaca--nnnnnnnnnnnnnaagaatgcagacatttattattaatc |
217 |
Q |
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| T |
32195803 |
acgacaacttttagtccaagaaaaatcaatcgtgtaataaaaagcaagtcatgtagacattttttttttttttgaagaatgcagacatttattattaatc |
32195704 |
T |
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| Q |
218 |
tccacatattgtttaaaaatgtttttg |
244 |
Q |
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| T |
32195703 |
tccacatattgtttaaaaatgtttttg |
32195677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 32198238 - 32198036
Alignment:
| Q |
41 |
aaattactgatttattagaatgtatcaaaaagtttttgagaaataatcatttaatttcagttggtgaagaatataatgcacgacaacttttagtccaaga |
140 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| |
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| T |
32198238 |
aaattact-atttattagaatgtatcaaaaagtttttgagaaataatcatttaatttcacttggtgaagaatataatacacggcaacttttagtccaaga |
32198140 |
T |
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| Q |
141 |
aaaatcaatcgtgtaataaaaagcaagtcatgtagacannnnnnnnnnnnnaagaatgcagacatttattattaatctccacatattgtttaaaaatgtt |
240 |
Q |
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| T |
32198139 |
aaaatcaatcgtgtaataaaaagcaagtcatatagacattttttttttttgaacaatgtagacatttattattaatctccacatattttttaaaaatgtt |
32198040 |
T |
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| Q |
241 |
tttg |
244 |
Q |
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|||| |
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| T |
32198039 |
tttg |
32198036 |
T |
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