View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_356 (Length: 244)
Name: NF11982A_low_356
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_356 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 31025379 - 31025618
Alignment:
| Q |
4 |
atacacctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattgaaatattagttaaaattctaatattaaacgatatt |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31025379 |
atactcctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattcaaatattagttaaaattctaatattaaacgatatt |
31025478 |
T |
|
| Q |
104 |
tattagtatatcaaatgcaacattgctatgaggaatctctgaacaaactcacatcactaaaaattgattgaatgcttttagtac----atttattttatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | |||||||||||| ||| |||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
31025479 |
tattagtatatcaaatgcaacattgctacgaggaatatgtgaacaaactcatatcgctaaaaattgattgaaagtttttagtacattaatttattttatg |
31025578 |
T |
|
| Q |
200 |
aaaagttctaaattgagaattaaaataaagggttaattgt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31025579 |
aaaagttctaaattgagaattaaaataaagggttaattgt |
31025618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 31073711 - 31073784
Alignment:
| Q |
164 |
aaattgattgaatgcttttagtacatttattttatgaaaagttctaaattgagaattaaaataaagggttaatt |
237 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||| ||||| |||||||| |
|
|
| T |
31073711 |
aaattgattgaatgcttttagcatatttattttatgaaaagttataaattaagaattataataattggttaatt |
31073784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 31040719 - 31040751
Alignment:
| Q |
193 |
ttttatgaaaagttctaaattgagaattaaaat |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31040719 |
ttttatgaaaagttctaaattgagaattaaaat |
31040751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 33533813 - 33533958
Alignment:
| Q |
94 |
aaacgatatttattagtatatcaaatgcaacattgctatgaggaatctctgaacaaactcacatcactaaaaattgattgaatgcttttagtacatttat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
33533813 |
aaacgatatttattagtatatcaaatgcaacatttttatgatgaatatgtgtacaaactcatatcgttaaaatttgattgaatgcttttagtacatttat |
33533912 |
T |
|
| Q |
194 |
tttatgaaaagttctaaattgagaattaaaataaagggttaattgt |
239 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||| |||||||||| |
|
|
| T |
33533913 |
tttatgaaaagtcctaaattgaaatttaaaatatgtggttaattgt |
33533958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University