View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_359 (Length: 244)
Name: NF11982A_low_359
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_359 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 4864226 - 4864443
Alignment:
| Q |
20 |
atcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4864226 |
atcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcgtgttgtcaaagtcaagt |
4864325 |
T |
|
| Q |
120 |
gatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4864326 |
gatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttg |
4864425 |
T |
|
| Q |
220 |
attgatttatattcttgg |
237 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
4864426 |
attgatttatattattgg |
4864443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 4696974 - 4696772
Alignment:
| Q |
27 |
ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttca |
126 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
4696974 |
ggtggaacttgattgccacccacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaagtcaagtgatatca |
4696875 |
T |
|
| Q |
127 |
aataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatt |
226 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| || || |
|
|
| T |
4696874 |
aatgatattttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtt |
4696775 |
T |
|
| Q |
227 |
tat |
229 |
Q |
| |
|
||| |
|
|
| T |
4696774 |
tat |
4696772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 4673008 - 4673195
Alignment:
| Q |
21 |
tcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtg |
120 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||| | || || ||||| |||||| ||| |||||| ||||||||||| |||||||||| |
|
|
| T |
4673008 |
tcacccggtggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtg |
4673107 |
T |
|
| Q |
121 |
atttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcata |
208 |
Q |
| |
|
||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||| ||||| | ||| ||||| |||||||| ||||| |
|
|
| T |
4673108 |
atttcaaatgataatttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcata |
4673195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 4711856 - 4711654
Alignment:
| Q |
27 |
ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttca |
126 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||| ||| | || || |||||||||||| ||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
4711856 |
ggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagtcaagtgatttca |
4711757 |
T |
|
| Q |
127 |
aataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatt |
226 |
Q |
| |
|
|| |||||||||||||| |||| |||||||| |||||||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
4711756 |
aaaggtattttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatt |
4711657 |
T |
|
| Q |
227 |
tat |
229 |
Q |
| |
|
||| |
|
|
| T |
4711656 |
tat |
4711654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 4637168 - 4637370
Alignment:
| Q |
27 |
ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttca |
126 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||||||| |||| || |||||||| ||| ||| | |||| ||||||| || |||||| || ||||| |
|
|
| T |
4637168 |
ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggtttca |
4637267 |
T |
|
| Q |
127 |
aataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatt |
226 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||| ||||||||||||| || |
|
|
| T |
4637268 |
aatagtaatttgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtt |
4637367 |
T |
|
| Q |
227 |
tat |
229 |
Q |
| |
|
||| |
|
|
| T |
4637368 |
tat |
4637370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 4783617 - 4783437
Alignment:
| Q |
29 |
tggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttcaaa |
128 |
Q |
| |
|
|||||||||| ||| ||| || ||||||||||||||||||||||| ||||||| |||||||||||| || |||||||||||||| || || | || | | |
|
|
| T |
4783617 |
tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaaaaccaggtaaattgata |
4783518 |
T |
|
| Q |
129 |
taatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
209 |
Q |
| |
|
||| | | ||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||| |
|
|
| T |
4783517 |
agataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa |
4783437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 4816046 - 4815866
Alignment:
| Q |
29 |
tggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttcaaa |
128 |
Q |
| |
|
|||||||||| ||| ||| || ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| | || || | || | | |
|
|
| T |
4816046 |
tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcagaaccaggtaacttgata |
4815947 |
T |
|
| Q |
129 |
taatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
209 |
Q |
| |
|
||| | | ||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||| |
|
|
| T |
4815946 |
cgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa |
4815866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 4667246 - 4667406
Alignment:
| Q |
21 |
tcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtg |
120 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||||||||||| | ||||||| |||| ||| ||||| || || |||||||||||||| |
|
|
| T |
4667246 |
tcaccaggtggaacttgactttcaccaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagta |
4667345 |
T |
|
| Q |
121 |
atttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacac |
181 |
Q |
| |
|
|| |||||| ||| ||||||||| |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
4667346 |
atgtcaaatgataatttgggtcactgaggtttgtgtaatagagaaaagacggcatagacac |
4667406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 4653883 - 4654000
Alignment:
| Q |
103 |
tgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaa |
202 |
Q |
| |
|
||||||| ||||||||||||| || | ||| |||||| |||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
4653883 |
tgttgtctgagtcaagtgatttgaagtcataatttggggcattgaggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaa |
4653982 |
T |
|
| Q |
203 |
ggcataataaggatttga |
220 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4653983 |
agcataataaggatttga |
4654000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 4845792 - 4845606
Alignment:
| Q |
31 |
gaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttcaaata |
130 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| |||| || ||||| || ||| ||| || ||| || ||||||||||| ||| | |||| ||||| |
|
|
| T |
4845792 |
gaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaatttgaaata |
4845693 |
T |
|
| Q |
131 |
atattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatt |
217 |
Q |
| |
|
||| ||| ||||| ||||||||||||| |||||||||||||| ||||| ||||| ||||| |||| ||| |||||| ||||||| |
|
|
| T |
4845692 |
ataatttaagtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggatt |
4845606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 4644130 - 4644200
Alignment:
| Q |
139 |
ggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
209 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||| |
|
|
| T |
4644130 |
ggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa |
4644200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 4644018 - 4644088
Alignment:
| Q |
27 |
ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggta |
97 |
Q |
| |
|
|||||||||||| || ||| || ||||||||||||||| |||| || |||||||| ||||||| |||||| |
|
|
| T |
4644018 |
ggtggaacttgaattcgaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggta |
4644088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 18925525 - 18925344
Alignment:
| Q |
28 |
gtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccgtgttgtcaaagtcaagtgatttcaa |
127 |
Q |
| |
|
||||||||||| | ||||| || ||||||||||||||||||||||| ||||||| | | || ||| | | |||| |||| | ||||| | || || |
|
|
| T |
18925525 |
gtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaaggccaagtaactttaa |
18925426 |
T |
|
| Q |
128 |
ataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
209 |
Q |
| |
|
|| || |||| ||||||||||||||||||||| |||||||||||||| ||||||| || ||||| || ||||| |||||| |
|
|
| T |
18925425 |
atgatgatttgagtcattgaggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa |
18925344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University