View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_36 (Length: 420)
Name: NF11982A_low_36
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 45229764 - 45230165
Alignment:
| Q |
7 |
attaccactttgacttttgattaatttagttgttccaatgttaaatgtgatcattgtcttccttcccaagcataatactatttaatttctattgaaagca |
106 |
Q |
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| T |
45229764 |
attaccactttgacttttgattaatttagttgttccaatgttaaatgtgatcattgtcttccttcccaagcataatactatttaatttctattgaaagca |
45229863 |
T |
|
| Q |
107 |
gaaccactcctgaagcaagtactaaaaattcagcatggacaacaaccaagtaatttacaagctagaagtnnnnnnnnnttggagcagttggccccaaaac |
206 |
Q |
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| T |
45229864 |
gaaccactcctgaagcaagtactaaaaattcagcatggacaacaaccaagtaatttacaagctagaagtaaaaaaaaattggagcagttggccccaaaac |
45229963 |
T |
|
| Q |
207 |
tcaaagaagatatgaattgtatacatacaatatttacaattatatgtacaaaaccattgacagagatgcattgacattttagctgctgatgtcaaagtat |
306 |
Q |
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| T |
45229964 |
tcaaagaagatatgaattgtatgcatacaatatttacaattatatgtacaaaaccattgacagagatgcattgacattttagctgctgatgtcaaagtat |
45230063 |
T |
|
| Q |
307 |
ttcggattagatgggaaatgatattccacattcaactgcaacatgaaataatcattaagtaacataaacaaatgaggcattaaaaccactttcatgtata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45230064 |
ttcggattagatgggaaatgatattccacattcaactgcaacatgaaataatcattaagtaacataaacaaatgaggcattaaaaccactttcatgtata |
45230163 |
T |
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| Q |
407 |
tt |
408 |
Q |
| |
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|| |
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| T |
45230164 |
tt |
45230165 |
T |
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