View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_363 (Length: 243)
Name: NF11982A_low_363
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_363 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 29586779 - 29586655
Alignment:
| Q |
100 |
gaagagtgtattgcagaatacactggtcgtgtgtattgcacgacagcaagtgtcgtgcggccaagcattttctttttcattaacactcttaaattgttat |
199 |
Q |
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| T |
29586779 |
gaagagtgtattgcagaatacactggt-gtgtgtattgctcgacagcaagtgtcgtgcggctaagcattttccttttcattaacactcttaaattgttat |
29586681 |
T |
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| Q |
200 |
caccccatatgttacatgatcagatt |
225 |
Q |
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| T |
29586680 |
cacctcatatgttacatgatcagatt |
29586655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 29586870 - 29586826
Alignment:
| Q |
8 |
tatatatattggcatgacattgcacgattgtgtgcgttgcttcac |
52 |
Q |
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| T |
29586870 |
tatatatattggcacgacattgcacgattgtgtgcgtggcttcac |
29586826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 44654000 - 44654072
Alignment:
| Q |
99 |
ggaagagtgtattgcagaatacactggtcgtgtgtattgcacgacagcaagtgtcgtgcggccaagcattttc |
171 |
Q |
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| T |
44654000 |
ggaagagtgtattgcagaatacactggtcatgtgtattgcacgacagcaagtgtcgtgcggctaagcattttc |
44654072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 44653912 - 44653953
Alignment:
| Q |
11 |
atatattggcatgacattgcacgattgtgtgcgttgcttcac |
52 |
Q |
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| T |
44653912 |
atatattggcacaacattgcacgattgtgtgcgtggcttcac |
44653953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 47278114 - 47278042
Alignment:
| Q |
99 |
ggaagagtgtattgcagaatacactggtcgtgtgtattgcacgacagcaagtgtcgtgcggccaagcattttc |
171 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||| |
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| T |
47278114 |
ggaagagtgtattgtggaatacactggtcgtgtgtatttcacgacggcaaatgtcgtgcggctaaacattttc |
47278042 |
T |
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