View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_367 (Length: 243)

Name: NF11982A_low_367
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_367
NF11982A_low_367
[»] chr7 (7 HSPs)
chr7 (37-233)||(26617737-26617933)
chr7 (88-229)||(39865471-39865612)
chr7 (37-229)||(33190302-33190494)
chr7 (37-164)||(14719370-14719501)
chr7 (37-188)||(7578536-7578687)
chr7 (139-220)||(14719287-14719367)
chr7 (140-233)||(37479525-37479617)
[»] chr4 (16 HSPs)
chr4 (37-221)||(52311220-52311404)
chr4 (61-229)||(54687659-54687826)
chr4 (79-212)||(20275950-20276082)
chr4 (67-229)||(26997226-26997388)
chr4 (37-197)||(5350929-5351089)
chr4 (61-229)||(54678539-54678709)
chr4 (88-229)||(26992050-26992194)
chr4 (40-225)||(17365674-17365858)
chr4 (137-229)||(6408036-6408127)
chr4 (138-229)||(22746635-22746726)
chr4 (96-199)||(27360251-27360354)
chr4 (37-229)||(12746523-12746715)
chr4 (175-229)||(14000179-14000231)
chr4 (175-226)||(13994875-13994924)
chr4 (40-162)||(18902113-18902234)
chr4 (107-163)||(20355099-20355155)
[»] chr1 (5 HSPs)
chr1 (72-233)||(40274356-40274518)
chr1 (67-230)||(40279148-40279311)
chr1 (96-229)||(29530158-29530292)
chr1 (58-222)||(29547775-29547940)
chr1 (106-188)||(27417427-27417509)
[»] chr5 (7 HSPs)
chr5 (37-229)||(16633255-16633446)
chr5 (67-229)||(19779954-19780116)
chr5 (67-221)||(19479453-19479607)
chr5 (67-230)||(19783201-19783363)
chr5 (37-164)||(17604690-17604821)
chr5 (139-201)||(17604824-17604886)
chr5 (37-129)||(35105030-35105122)
[»] chr3 (6 HSPs)
chr3 (115-228)||(8832533-8832646)
chr3 (103-229)||(39875817-39875941)
chr3 (116-229)||(44126710-44126823)
chr3 (177-229)||(13921708-13921758)
chr3 (37-159)||(21587185-21587306)
chr3 (145-229)||(7873835-7873918)
[»] chr8 (6 HSPs)
chr8 (138-230)||(17909890-17909983)
chr8 (170-229)||(10739137-10739196)
chr8 (170-229)||(15007178-15007236)
chr8 (174-229)||(36911928-36911983)
chr8 (137-218)||(10734068-10734149)
chr8 (90-214)||(12145639-12145764)
[»] chr2 (3 HSPs)
chr2 (37-201)||(19912279-19912443)
chr2 (37-114)||(34111054-34111131)
chr2 (96-163)||(45276409-45276475)
[»] chr6 (1 HSPs)
chr6 (177-229)||(23599934-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (175-229)||(16258-16312)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 26617933 - 26617737
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617933 ttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 26617834  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctttgat 233  Q
    |||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26617833 ttgaatcctataaatagggctcatattgaattgtaaagacacacttgtgaagagaataatacaaagtgttttcatcttcttcttcctcttctttgat 26617737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 39865471 - 39865612
Alignment:
Q  88 agtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaa 187  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||  |||||||||||  ||||    
T  39865471 agtgaatagttagtggaccttaattgtcttgatcactcacttactcatcttgtgtactataaatagggctcatatcgtattgcaaagacacactcttgaa 39865570  T
Q  188 gagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  39865571 gagaataatacaaagtgctttcatcttctccttcctcttctt 39865612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 33190494 - 33190302
Alignment:
Q  37 ttagtggatttccatcctta-gtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcat 135  Q
    ||||||||| | |||||||| ||||||||| |||| ||||   |||||  | |||||||||||| ||||||||| ||  |||||||||||||||| ||||    
T  33190494 ttagtggatgtacatccttaagtctttcaccttcctataatttccattggtaagtgaatagttactggaccttagttgccttgatcactcacttactcat 33190395  T
Q  136 cttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||||  ||||| |||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33190394 cttgtgtattataa-taggtctcatattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttctt 33190302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 14719501 - 14719370
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 132  Q
    ||||||||| ||| ||||||||||| ||| |||| ||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  14719501 ttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 14719402  T
Q  133 catcttgtgtcctataaataggactcatattg 164  Q
    ||| |||| || ||||||||||||||||||||    
T  14719401 cattttgtatcttataaataggactcatattg 14719370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 7578536 - 7578687
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| ||||||||||||||| ||| |||||||||  ||||| | ||| || || || ||||| |||||||||  ||||||| ||||||  | ||     
T  7578536 ttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcacttgcttata 7578635  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 188  Q
    |||| ||||||||||||||||||||||  | | |||||||||||||| ||||    
T  7578636 ttgtatcctataaataggactcatattatagtataaagacacacttgagaag 7578687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 14719367 - 14719287
Alignment:
Q  139 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttctt 220  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||  |||||||||||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa-agctttcatcttcttctt 14719287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 37479617 - 37479525
Alignment:
Q  140 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctttgat 233  Q
    |||||||||||||||||  |||||| | | |||||| ||| |||||||||||||||||||||  |||||| || |||||||| | |||||||||    
T  37479617 tgtcctataaataggacctatattgcaatgtaaagaaacatttgtgaagagaataatacaaa-agctttcttcatcttcttctttttctttgat 37479525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 52311404 - 52311220
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    |||||| || ||||||| ||||||| ||| |||| |||||||| |||  |||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  52311404 ttagtgaatgtccatccctagtcttccaccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactcacttagtcatc 52311305  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 221  Q
    ||||||||||||||||||| |||||||| | | |||||||||| ||||||||||||||||||||| || ||||||| ||||||||    
T  52311304 ttgtgtcctataaataggattcatattgcagtgtaaagacacatttgtgaagagaataatacaaaatgttttcatcatcttcttc 52311220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 54687826 - 54687659
Alignment:
Q  61 ttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcat 160  Q
    |||||||||| |||||||| |||| | |||||||| |||| |||||| |||| ||||||||||| ||||| ||||||||| | |||||||||||  ||||    
T  54687826 ttcactttcctataacccc-attagtaagtgaataattaggggacctcaattttcttgatcacttacttactcatcttgtatactataaatagggttcat 54687728  T
Q  161 attgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  54687727 attgtattataaagatacacttgtgaagagaataatacaaagtgatttcatcttctccttcctcttctt 54687659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 20275950 - 20276082
Alignment:
Q  79 ccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacac 178  Q
    |||||| | ||||||||||||||||||||||| |  |||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||| |||||||||    
T  20275950 ccattagtaagtgaatagttagtggaccttaactgccttgatcactcacttactcatcttatgtactataaataggactcatattgtattgtaaagacac 20276049  T
Q  179 acttgtgaagagaataatacaaagtgctttcatc 212  Q
    || |||||| |||||||||||||| |||||||||    
T  20276050 acatgtgaacagaataatacaaag-gctttcatc 20276082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 26997226 - 26997388
Alignment:
Q  67 ttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||| ||||| | ||||| | |||||||||| |||| ||||||||    |||| |||| ||||| ||||||||||| ||||||||||||||||||||  |    
T  26997226 ttcctataactctcattagtaagtgaatagtcagtgaaccttaatagctttgaacactaacttactcatcttgtgtactataaataggactcatattata 26997325  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  26997326 ttgcaaagacatacttgtgaagagaataatacaaagtgctttcatcttctcctttctcttctt 26997388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 5350929 - 5351089
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| ||||||||||||||| ||| |||| |||| | ||||||  |||||||||||||| ||||||||||||| |||||| | |||||| ||||     
T  5350929 ttagtggatgtccatccttagtcttccaccttcctataatctccattagcgagtgaatagttagcggaccttaattattttgatcgc-cacttactcatt 5351027  T
Q  137 ttgtgtcctataaataggactcatattgaatt-ctaaagacacacttgtgaagagaataata 197  Q
    |||||||||||||||||||||||||||  |||   ||||||||||||||||| |||||||||    
T  5351028 ttgtgtcctataaataggactcatattttattgaaaaagacacacttgtgaatagaataata 5351089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 54678709 - 54678539
Alignment:
Q  61 ttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactc--acttattcatcttgtgtcctataaataggactc 158  Q
    ||||| |||| ||||||||| ||| | ||||||||||| |||||||||||||   |||||||| |  ||||| |||||||||||  ||||||||||||||    
T  54678709 ttcaccttcctataacccccgttattaagtgaatagttggtggaccttaatttcattgatcacacttacttactcatcttgtgtattataaataggactc 54678610  T
Q  159 atattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||  ||| |||||| ||  ||||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  54678609 atattatattgtaaagatacgtttgtgaagagaataataaaaagtgttttcatcttctccttcctcttctt 54678539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 26992050 - 26992194
Alignment:
Q  88 agtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaa 187  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||||  |||| ||||||||||| ||||||||  |||  ||||| | |||||||||    
T  26992050 agtgaatagttagtggaccttaattgccttgatcactaacttattcatcccgtgtactataaatagggctcatattatattgcaaagatatacttgtgaa 26992149  T
Q  188 gag---aataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||   ||||||||||||| ||||||||||||  |||||||||||    
T  26992150 gagaataataatacaaagtactttcatcttctctttcctcttctt 26992194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 17365674 - 17365858
Alignment:
Q  40 gtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 139  Q
    |||||| | ||||||||||||| || ||||  ||||||  ||||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  17365674 gtggatgttcatccttagtcttccattttcttataaccttcattagtgagtgaatagttagtggaccttaatttctttgatcactcacttactcatcttg 17365773  T
Q  140 tgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctct 225  Q
    ||||||||||||| | ||| ||||  | | |||||| ||  ||||||| | ||||||||||| || ||||| | ||||||||||||    
T  17365774 tgtcctataaataaggctc-tattatagtgtaaagaaacctttgtgaacaaaataatacaaaatgttttcaccatcttcttcctct 17365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 6408036 - 6408127
Alignment:
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||||||||||||||||||||  |||||| |   ||||| |||||||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  6408036 ttgtgtcctataaataggacctatattgcaaagtaaaggcacacttgtgaagagaataatacaaaat-ctttcatcttcttcttcttcttctt 6408127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 22746635 - 22746726
Alignment:
Q  138 tgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||||||||||||||||  | |||  | | ||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  22746635 tgtgtcctataaataggacctacattacaatgtaatgacacccttgtgaagagaataatacaaagtactttcatcttcttcctcctcgtctt 22746726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 27360251 - 27360354
Alignment:
Q  96 gttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataa 195  Q
    |||||||| |||||||||  ||||||| |||||| ||||| |||| ||||||||||||||||  ||||  | | ||||||||| |||||||| | |||||    
T  27360251 gttagtggtccttaattactttgatcattcacttgttcatattgtatcctataaataggacttgtattatagtgtaaagacacgcttgtgaaaaaaataa 27360350  T
Q  196 taca 199  Q
    ||||    
T  27360351 taca 27360354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 12746715 - 12746523
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| |||||||| | |||| ||| |||| |||||| | |||| ||| || ||| ||| ||| ||||||| |  ||||||| ||||||  ||||     
T  12746715 ttagtggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgatcattcacttgctcat- 12746617  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||| ||||||||||||| ||  |||||  | | | || ||||||||| |||| ||||||||||||  | |||||||||||||| ||||||||||    
T  12746616 ttgcgtcctataaatagaacctatattataatgtgaatgacacacttatgaaaagaataatacaatatactttcatcttcttcctcctcttctt 12746523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 14000179 - 14000231
Alignment:
Q  175 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||    
T  14000179 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttctt 14000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 13994875 - 13994924
Alignment:
Q  175 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctctt 226  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||||||    
T  13994875 acacacttgtgaagagaataacacaaa--gctttcatcatcttcttcctctt 13994924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 18902234 - 18902113
Alignment:
Q  40 gtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttg 139  Q
    |||||| | |||||||| |||||||| |||| |||||| |||||| ||| || ||  ||| ||| |||||||| | ||||||  ||||||  |||| |||    
T  18902234 gtggatgttcatccttaatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatctttcacttgctcat-ttg 18902136  T
Q  140 tgtcctataaataggactcatat 162  Q
    ||||||||||||  |||||||||    
T  18902135 tgtcctataaatctgactcatat 18902113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 20355155 - 20355099
Alignment:
Q  107 ttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatatt 163  Q
    |||||||  ||||||| ||| || ||||| |||| ||||||||||||||||||||||    
T  20355155 ttaattactttgatcattcagttgttcatattgtatcctataaataggactcatatt 20355099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 40274518 - 40274356
Alignment:
Q  72 ataacccccattaatgagtgaa-tagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattct 170  Q
    ||||| ||||||| | |||||| |||||||||||| ||||||  |||||||||||||||| |||||||||||  |||||||||| || |||||| |||      
T  40274518 ataactcccattagtaagtgaaatagttagtggactttaattgccttgatcactcacttactcatcttgtgtattataaatagggctaatattgtattgc 40274419  T
Q  171 aaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctttgat 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40274418 aaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctcttctttgat 40274356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 40279311 - 40279148
Alignment:
Q  67 ttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||| ||||| ||||||| | |||||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||  |||||||| |    
T  40279311 ttcctataactcccattagtaagtgaatagttagtggaccttaattgccttgatcactcacttactcatcttgtgtactataaatagggttcatattgta 40279212  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttcttt 230  Q
    ||  ||||||||| ||||||||||||||||| |||||| ||||||||||| ||| |||||||||    
T  40279211 ttgcaaagacacatttgtgaagagaataatataaagtgttttcatcttctcctttctcttcttt 40279148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 29530158 - 29530292
Alignment:
Q  96 gttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaaga-cacacttgtgaag-agaat 193  Q
    |||||||| ||||||||   ||||||| ||||||  |||| ||||||| ||||||||||||  |||||| | | |||||| ||||||||  ||  |||||    
T  29530158 gttagtggtccttaattggtttgatcattcacttgctcat-ttgtgtcatataaataggacctatattgtaatgtaaagaacacacttgaaaaatagaat 29530256  T
Q  194 aatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||||||||||| |||||||| |||||||||||||||    
T  29530257 aatacaaagtgttttcatctccttcttcctcttctt 29530292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 29547775 - 29547940
Alignment:
Q  58 tctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggact 157  Q
    |||| ||| |||| |||| |||||||| | | || || |||||||| ||||||||   ||||||| ||||||  |||| || |||||||||||||||||     
T  29547775 tcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcacttgctcat-ttatgtcctataaataggacc 29547873  T
Q  158 catattgaattctaaaga-cacacttgtgaa-gagaataatacaaagtgctttcatcttcttcttcc 222  Q
     |||||| | | |||||| ||||||||  || |||||||||||||| |  |||||||||||||||||    
T  29547874 tatattgtaatgtaaagaacacacttgaaaaagagaataatacaaaatattttcatcttcttcttcc 29547940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 27417509 - 27417427
Alignment:
Q  106 cttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaag 188  Q
    ||||||||  ||||||| ||||||| |||| |||| || |||||||||||||| ||||  | | |||||||||||||| ||||    
T  27417509 cttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtattataatgtaaagacacacttgagaag 27417427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 16633446 - 16633255
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| ||||||||||||||| ||| |||| |||||||| ||||  |||||||||||||||||||||||||||  ||||||| ||||||| ||| |    
T  16633446 ttagtggatgtccatccttagtcttccaccttcctataacccc-attagcgagtgaatagttagtggaccttaattactttgatcattcacttactcaac 16633348  T
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||||||||||||||| ||||||||| |||  |||||||| |||||||||||||||||| |||  | ||||||| || ||||| |||||||    
T  16633347 ttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaaggttttcatcatcatcttcttcttctt 16633255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 229
Target Start/End: Complemental strand, 19780116 - 19779954
Alignment:
Q  67 ttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||| ||||| | ||||| | |||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||| ||||||||| |    
T  19780116 ttcctataactctcattagtaagtgaatagttagtggaccttaattaccttgatcactcacttactcgtcttgtgtactataaatagggctcatattgta 19780017  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||  |||||||||||  ||||||||||||||||||||||||| |||||||  |||||||||||    
T  19780016 ttacaaagacacactcttgaagagaataatacaaagtgcttttatcttctcattcctcttctt 19779954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 19479607 - 19479453
Alignment:
Q  67 ttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||| ||||| | ||||| | |||||||||||||||||||||||||  ||||||||||| |||| ||||||||||| ||||||||||| || |||||| |    
T  19479607 ttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatcactcgcttactcatcttgtgtactataaatagggcttatattgta 19479508  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttc 221  Q
    || ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  19479507 ttgtaaagacacacttataaagagaataatacaaagttctttcatcttcttcttc 19479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 19783363 - 19783201
Alignment:
Q  67 ttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaa 166  Q
    |||| ||||| | ||||| | ||||||||||||||||| |||||||   || |||||||||||| ||||||||||| ||||||||||  ||||||||| |    
T  19783363 ttcctataactctcattagtaagtgaatagttagtggaacttaattgctttcatcactcacttactcatcttgtgtactataaatagtgctcatattgta 19783264  T
Q  167 ttctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttcttt 230  Q
    | | |||||||||||  ||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  19783263 tgc-aaagacacactcttgaagagaataatacaaagtgcttttatcttctcctttctcttcttt 19783201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 17604690 - 17604821
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaata----gttagtggaccttaattatcttgatcactcacttatt 132  Q
    ||||||||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||||    ||||||||||||||||||| |||||||||||  ||||    
T  17604690 ttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatagttagtggaccttaattattttgatcactcagctatt 17604789  T
Q  133 catcttgtgtcctataaataggactcatattg 164  Q
    ||| |||| || ||||||||||||||||||||    
T  17604790 cattttgtatcttataaataggactcatattg 17604821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 17604824 - 17604886
Alignment:
Q  139 gtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaa 201  Q
    |||||||||||||||| ||||||||| | | ||||  ||||||||||||||||||||||||||    
T  17604824 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaa 17604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 35105030 - 35105122
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcactt 129  Q
    ||||||||| ||||||||||||||| ||| || | ||||| ||||| | ||| || || |||||||  |||||||||  ||||||| ||||||    
T  35105030 ttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactt 35105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 8832646 - 8832533
Alignment:
Q  115 cttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatctt 214  Q
    |||||||||||||||| ||||||||||| |||||||||||  |||||||| |||  ||||||||| |  ||||||||||||||||||||| ||||||| |    
T  8832646 cttgatcactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacagtcttgaagagaataatacaaagtgatttcatcct 8832547  T
Q  215 cttcttcctcttct 228  Q
    || |||||||||||    
T  8832546 ctccttcctcttct 8832533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 39875817 - 39875941
Alignment:
Q  103 gaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaag 202  Q
    ||||||||||  |||||||||||||||| ||||||||||| |||||||||   ||| ||||| |||  |||||||||||||||||||||  ||||||||     
T  39875817 gaccttaattgccttgatcactcacttactcatcttgtgtactataaataaagctcctattgtattgcaaagacacacttgtgaagaga--aatacaaat 39875914  T
Q  203 tgctttcatcttcttcttcctcttctt 229  Q
    | |||||||||||||| |||| |||||    
T  39875915 tactttcatcttcttcctccttttctt 39875941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 44126823 - 44126710
Alignment:
Q  116 ttgatcactcacttattcatcttgtgtcctataaataggactcatattgaattctaaa-gacacacttgtgaagagaataatacaaagtgctttcatctt 214  Q
    ||||||| ||||||  |||| ||||||||||||||||||||  |||||| | | | || |||||||||||||||||||||||||||||| ||||||||||    
T  44126823 ttgatcattcacttgctcat-ttgtgtcctataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaagtactttcatctt 44126725  T
Q  215 cttcttcctcttctt 229  Q
    |||||| ||||||||    
T  44126724 cttctttctcttctt 44126710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 13921708 - 13921758
Alignment:
Q  177 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||||||||||||||||||| |||||  ||||||||| ||||||||||||||||    
T  13921708 acacttgtgaagagaataacacaaa--gctttcatcatcttcttcctcttctt 13921758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 21587306 - 21587185
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||| | |||| ||||| |||| ||| |||| ||||||||||||| |||  | || |||||||  |||||| |   ||||||| ||||||  ||||     
T  21587306 ttagtgggtgtccacccttaatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttgatcattcacttgctcat- 21587208  T
Q  137 ttgtgtcctataaataggactca 159  Q
    |||||||||||||||||||||||    
T  21587207 ttgtgtcctataaataggactca 21587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 7873918 - 7873835
Alignment:
Q  145 tataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||||| ||||||| ||  | | |||| ||||| |||| ||||||||||||||||| ||||||||| || ||||| |||||||    
T  7873918 tataaataagactcatgttttaatgtaaaaacacatttgtaaagagaataatacaaag-gctttcatcatcgtcttcttcttctt 7873835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 17909890 - 17909983
Alignment:
Q  138 tgtgtcctataaataggactcatattgaattctaaaga-cacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttcttt 230  Q
    |||||||||||||||||||| ||||   | | |||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||| |||||    
T  17909890 tgtgtcctataaataggacttatatctcaatgtaaagaacacacttgagaagagaataatacaaagtactttcatcttctccttcctcatcttt 17909983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 10739137 - 10739196
Alignment:
Q  170 taaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  10739137 taaagatatacttgtgaagagaataatacaaagtgctttcatcttctccattctcttctt 10739196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 15007178 - 15007236
Alignment:
Q  170 taaagacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  15007178 taaagacacactggtgaagaga-taatacaaagtgctttcatcttctccttcctcatctt 15007236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 36911983 - 36911928
Alignment:
Q  174 gacacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    ||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||    
T  36911983 gacacacttctgaagagaataataaaaagtgttttcaccttcttcttcctcttctt 36911928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 10734068 - 10734149
Alignment:
Q  137 ttgtgtcctataaataggactcatattgaattctaaagacacacttgtgaagagaataatacaaagtgctttcatcttcttc 218  Q
    |||| |||||||||||||||  | ||||   | |||||| | |||||||||||||||||||||||||| |||||||||||||    
T  10734068 ttgtatcctataaataggacctacattgtcatgtaaagatatacttgtgaagagaataatacaaagtgttttcatcttcttc 10734149  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 12145764 - 12145639
Alignment:
Q  90 tgaatagttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaa-taggactcatattgaattctaaagacacacttgtgaag 188  Q
    ||||||||||||||  ||||||||  ||||||||||||||  |||| |||||||||||||| || ||||||| |   | | |||| |||||||| |||||    
T  12145764 tgaatagttagtggttcttaattactttgatcactcacttgctcattttgtgtcctataaaataagactcatttgttagtgtaaaaacacacttctgaag 12145665  T
Q  189 agaataatacaaagtgctttcatctt 214  Q
    || |||||||| |  |||||||||||    
T  12145664 aggataatacacaaagctttcatctt 12145639  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 19912279 - 19912443
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactcacttattcatc 136  Q
    ||||||||| |||| ||||| |||| ||| |||| |||||||| |||| ||| || || |||||| | ||||||||   ||||||||||||||  ||||     
T  19912279 ttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttgatcactcacttgctcat- 19912377  T
Q  137 ttgtgtcctataaataggactcatatt-gaattctaaagacacacttgtgaagagaataatacaaa 201  Q
    ||||||||||||||||||||  |||||  |||   ||| | |||||||||||||||||||||||||    
T  19912378 ttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaa 19912443  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 34111131 - 34111054
Alignment:
Q  37 ttagtggatttccatccttagtctttcactttcccataacccccattaatgagtgaatagttagtggaccttaattat 114  Q
    ||||||||| |||||||||| || | ||| |||| ||||| | ||||| |||||||||||||||||||||||||||||    
T  34111131 ttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgagtgaatagttagtggaccttaattat 34111054  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 45276409 - 45276475
Alignment:
Q  96 gttagtggaccttaattatcttgatcactcacttattcatcttgtgtcctataaataggactcatatt 163  Q
    |||||||| |||||||  | |||| || ||||||| |||| |||||||||||||||||||||||||||    
T  45276409 gttagtggtccttaatagttttgaccattcacttactcat-ttgtgtcctataaataggactcatatt 45276475  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 23599986 - 23599934
Alignment:
Q  177 acacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| |||||||    
T  23599986 acacttatgaagagaataatacaaaatgctttcatcttcttcttcatcttctt 23599934  T

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Target: scaffold0248 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 16258 - 16312
Alignment:
Q  175 acacacttgtgaagagaataatacaaagtgctttcatcttcttcttcctcttctt 229  Q
    |||||| |||||||| |||||||||||||||||| || || ||||||||||||||    
T  16258 acacacctgtgaagaaaataatacaaagtgcttttatatttttcttcctcttctt 16312  T

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