View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_389 (Length: 240)
Name: NF11982A_low_389
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_389 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 45643012 - 45643240
Alignment:
| Q |
9 |
tggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgtt |
108 |
Q |
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| T |
45643012 |
tggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgtt |
45643111 |
T |
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| Q |
109 |
cccgcttctttgaggggaatggttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatcca |
208 |
Q |
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| T |
45643112 |
cccgcttctttgaggggaatggttgtggcaccgctactgtctgtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatcca |
45643211 |
T |
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| Q |
209 |
ctgtgtgccacccagcttcatagttgaacact |
240 |
Q |
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| T |
45643212 |
ctgtgtg---cccagctacatagttgaacact |
45643240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 240
Target Start/End: Complemental strand, 45703282 - 45703081
Alignment:
| Q |
42 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggttgtggca |
138 |
Q |
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| T |
45703282 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45703183 |
T |
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| Q |
139 |
ccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
238 |
Q |
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| T |
45703182 |
ccactaccgtctgtactaattgaatttctagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
45703083 |
T |
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| Q |
239 |
ct |
240 |
Q |
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| T |
45703082 |
ct |
45703081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 45650283 - 45650500
Alignment:
| Q |
16 |
gcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgctt |
115 |
Q |
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||||||| |||| |||||||| |||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
45650283 |
gcagaagaagcactagaagaagccttaactttaacagaaagtttcatgccacctgtgcaatgtccaggaacagcacatatgaagtaatgtgttcctgctt |
45650382 |
T |
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| Q |
116 |
ctttgaggggaatggttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtg |
215 |
Q |
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| T |
45650383 |
tcttgaggggaatggttgtgggaccactgctgtcagtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatccactgtgtg |
45650482 |
T |
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| Q |
216 |
ccacccagcttcatagttgaa |
236 |
Q |
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| T |
45650483 |
---cccagctccatagttgaa |
45650500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 240
Target Start/End: Complemental strand, 45887094 - 45886893
Alignment:
| Q |
42 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggttgtggca |
138 |
Q |
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| T |
45887094 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45886995 |
T |
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| Q |
139 |
ccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
238 |
Q |
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| T |
45886994 |
ccactaccgtctgtactaattgaatttctagttgtgcatgaattatagtcactttcattaacttcatccactgtgtgccacccagcttcatagttgaaca |
45886895 |
T |
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| Q |
239 |
ct |
240 |
Q |
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|| |
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| T |
45886894 |
ct |
45886893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 30054756 - 30054843
Alignment:
| Q |
130 |
gttgtggcaccactgctgtcagtactaattgaatttccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgcc |
217 |
Q |
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| T |
30054756 |
gttgtggcaccgctactgtctgtactaattgaatttctggttatgcatgatttatagtcactttctttaacttaatccactgtgtgcc |
30054843 |
T |
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