View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_391 (Length: 240)

Name: NF11982A_low_391
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_391
NF11982A_low_391
[»] chr4 (10 HSPs)
chr4 (2-240)||(8654746-8654984)
chr4 (13-240)||(47541154-47541381)
chr4 (2-240)||(3129655-3129890)
chr4 (56-240)||(7662966-7663150)
chr4 (47-240)||(2631627-2631820)
chr4 (93-240)||(23873240-23873387)
chr4 (93-240)||(55298849-55298996)
chr4 (47-240)||(20675251-20675444)
chr4 (47-240)||(8486699-8486892)
chr4 (175-240)||(49926112-49926177)
[»] scaffold0029 (1 HSPs)
scaffold0029 (2-240)||(134527-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (2-240)||(312354-312592)
scaffold0002 (2-240)||(327808-328046)
[»] chr5 (5 HSPs)
chr5 (2-240)||(10486593-10486831)
chr5 (47-240)||(34481176-34481369)
chr5 (126-240)||(587745-587859)
chr5 (185-226)||(23923092-23923133)
chr5 (195-232)||(27795720-27795757)
[»] chr3 (12 HSPs)
chr3 (2-240)||(49731605-49731843)
chr3 (2-240)||(30167017-30167255)
chr3 (47-240)||(2813218-2813411)
chr3 (47-240)||(29309637-29309830)
chr3 (47-240)||(6176196-6176389)
chr3 (119-240)||(9379326-9379447)
chr3 (168-240)||(23602002-23602074)
chr3 (176-240)||(25872955-25873019)
chr3 (168-225)||(8943596-8943653)
chr3 (195-234)||(48569905-48569944)
chr3 (197-235)||(46248738-46248776)
chr3 (182-234)||(18368808-18368860)
[»] chr1 (7 HSPs)
chr1 (2-240)||(21528390-21528632)
chr1 (2-240)||(36306013-36306251)
chr1 (47-240)||(37530795-37530988)
chr1 (93-240)||(32353061-32353208)
chr1 (47-240)||(48073149-48073342)
chr1 (159-240)||(48265548-48265629)
chr1 (168-240)||(30970447-30970519)
[»] chr7 (8 HSPs)
chr7 (2-240)||(15653378-15653616)
chr7 (2-194)||(46623968-46624160)
chr7 (47-240)||(13440282-13440475)
chr7 (47-228)||(12378446-12378627)
chr7 (168-240)||(45943080-45943152)
chr7 (111-234)||(43105546-43105669)
chr7 (197-235)||(27723973-27724011)
chr7 (169-234)||(41339760-41339825)
[»] chr8 (6 HSPs)
chr8 (2-240)||(7452581-7452819)
chr8 (47-237)||(16420728-16420918)
chr8 (169-234)||(12134563-12134628)
chr8 (191-240)||(19384572-19384621)
chr8 (186-232)||(13879344-13879390)
chr8 (184-232)||(7555684-7555732)
[»] chr2 (12 HSPs)
chr2 (2-240)||(45421748-45421987)
chr2 (42-240)||(13550353-13550551)
chr2 (47-239)||(26894330-26894522)
chr2 (47-239)||(26899769-26899961)
chr2 (93-240)||(43627728-43627875)
chr2 (144-240)||(31085452-31085548)
chr2 (144-240)||(33548101-33548197)
chr2 (42-162)||(13550884-13551004)
chr2 (185-234)||(36804147-36804196)
chr2 (185-240)||(22052856-22052911)
chr2 (196-234)||(36804362-36804400)
chr2 (186-232)||(40176905-40176951)
[»] scaffold0418 (1 HSPs)
scaffold0418 (56-240)||(7904-8088)
[»] chr6 (8 HSPs)
chr6 (93-240)||(25318083-25318230)
chr6 (93-240)||(26205577-26205724)
chr6 (47-240)||(23347185-23347378)
chr6 (93-240)||(15674054-15674205)
chr6 (188-232)||(33630334-33630378)
chr6 (169-232)||(4474935-4474998)
chr6 (210-240)||(1683269-1683299)
chr6 (168-234)||(5041753-5041819)
[»] scaffold0131 (1 HSPs)
scaffold0131 (2-117)||(4222-4337)
[»] scaffold0112 (1 HSPs)
scaffold0112 (169-234)||(15490-15555)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 8654746 - 8654984
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  8654746 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 8654845  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  8654846 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 8654945  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8654946 ggaggacttgttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 47541381 - 47541154
Alignment:
Q  13 ggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaat 112  Q
    |||||||||||||| |||||||       |||| ||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||    
T  47541381 ggttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaat 47541282  T
Q  113 aagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgt 212  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| | ||||||| |||| |||||||  |||    
T  47541281 aagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgt 47541182  T
Q  213 tagcggagtgtagggctttacttcttga 240  Q
    ||||||||||||||||||||||||||||    
T  47541181 tagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 3129655 - 3129890
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||||||||||||||||||||        |||| | ||||||||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  3129655 gtggctaggagggttggagatggagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagt 3129754  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||   || |||  |||||||||||||||| | ||||||| ||||||    
T  3129755 taacagagaataagttcatgtctgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtggga 3129854  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||    |||||||||||||||||||||||||||||||    
T  3129855 ggag---atgttagcggagtgtagggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
Q  56 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 155  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  156 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7663150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 2631820 - 2631627
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  2631820 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 2631721  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2631720 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  93 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 192  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  193 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  93 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 192  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  193 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 20675444 - 20675251
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||||||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| ||| || ||||| |||||| | | |||||    
T  20675444 gataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttg 20675345  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| | |  ||||||||| |||||||||||||    
T  20675344 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 8486699 - 8486892
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||| | |||||| |   |||||||||||||||||||||| |||| ||||||| |||| ||| |||   ||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
Q  175 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || |||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga 49926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 134527 - 134765
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  134527 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 134626  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  134627 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 134726  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  134727 ggaggacttgttagcggagtgtagggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 312354 - 312592
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  312354 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 312453  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  312454 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 312553  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  312554 ggaggacttgttagcggagtgtagggctttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 327808 - 328046
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  327808 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 327907  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  327908 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 328007  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  328008 ggaggacttgttagcggagtgtagggctttacttcttga 328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 10486593 - 10486831
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  10486593 gtggctaggagggttggagatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagt 10486692  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||    
T  10486693 taacatagaataagttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtggga 10486792  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  10486793 ggaggacatgttagcggagtgtagggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 34481369 - 34481176
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||||||||||| |||||| || ||||  | ||| || || |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||    
T  34481369 gataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcatatttgctctctgttg 34481270  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  34481269 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 587859 - 587745
Alignment:
Q  126 tggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 225  Q
    ||||| ||||||| |||||   ||||||||| ||||| | | | ||||||||||| |||||| | ||| |||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  226 ggctttacttcttga 240  Q
    |||||||||||||||    
T  587759 ggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 23923133 - 23923092
Alignment:
Q  185 aggttgtggctgtgggaggaggacttgttagcggagtgtagg 226  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  23923133 aggttgtgggtgtgggaggaggagatgttagcggagtgtagg 23923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 27795757 - 27795720
Alignment:
Q  195 tgtgggaggaggacttgttagcggagtgtagggcttta 232  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  27795757 tgtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 49731605 - 49731843
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||||||||||||||||| ||        |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  49731605 gtggctaggagggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagt 49731704  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||| |||| ||| ||||||||||||||||||| ||||||| ||||||    
T  49731705 taacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtggga 49731804  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  49731805 ggaggagttgttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 30167017 - 30167255
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||||| |||||  ||||||||       |||||||||||||||||||||||||||| ||  ||||||||||||||||  |||||||||    
T  30167017 gtggctaggagggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagt 30167116  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    |||||||||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||    
T  30167117 taacagagaataagctcatgtttgtggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtggga 30167216  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||  ||||||||||||||||| |||||||||||||    
T  30167217 ggaggagatgttagcggagtgtaggactttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 2813218 - 2813411
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  2813218 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 2813317  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2813318 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 29309830 - 29309637
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| ||||| |||||| | ||||| |    
T  29309830 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcg 29309731  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||| |||||||||||    
T  29309730 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttcttga 29309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 6176196 - 6176389
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||| ||||||||||| |||||| || || |||||| | |||||||    
T  6176196 gataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttg 6176295  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| | || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  6176296 attcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
Q  119 atgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcgg 218  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||| | ||||||||||||||| || ||||| |||| |||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  219 agtgtagggctttacttcttga 240  Q
    |||||||||| ||||| |||||    
T  9379347 agtgtagggcattactacttga 9379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
Q  168 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||||||||| |||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
Q  176 tggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||| ||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga 25873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  168 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 225  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 48569905 - 48569944
Alignment:
Q  195 tgtgggaggaggacttgttagcggagtgtagggctttact 234  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  48569905 tgtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  197 tgggaggaggacttgttagcggagtgtagggctttactt 235  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 18368808 - 18368860
Alignment:
Q  182 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 234  Q
    |||||||||||| ||||||||||||  ||| ||| |||||||||||| |||||    
T  18368808 cgtaggttgtgggtgtgggaggaggctttgctagaggagtgtagggcattact 18368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 21528632 - 21528390
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    |||||||||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21528632 gtggctaggagggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagt 21528533  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||  ||||||    
T  21528532 taacagagaataagttcatgtctgttggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtggga 21528433  T
Q  202 ggaggacttgttagcggag----tgtagggctttacttcttga 240  Q
    ||||||| ||||||||| |     |||||||||||||||||||    
T  21528432 ggaggacatgttagcggtggagacgtagggctttacttcttga 21528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 36306251 - 36306013
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    |||||||||||||||||||||||  ||||||||       |||  ||||||||||||||||||||||||||  |||||| ||||||||| ||||||||||    
T  36306251 gtggctaggagggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagt 36306152  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    |||| ||||||||| | |||| ||||||||||||||| |||||||||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||| |    
T  36306151 taacggagaataagctcatgtatgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaa 36306052  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||  |||||| ||||||||||||||||||||||||    
T  36306051 ggaggagatgttagaggagtgtagggctttacttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 37530988 - 37530795
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||||||||||| |||||| || ||||  |  || || || |||||||||||||||||||||||  ||||| ||||||||||||| | |||||||    
T  37530988 gataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcagacttgctctctgttg 37530889  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  37530888 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  93 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 192  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  193 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    || |||| ||||||| ||| |||  |||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 48073149 - 48073342
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  48073149 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 48073248  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  48073249 attcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
Q  159 ggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
Q  168 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| |||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga 30970519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 15653378 - 15653616
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    |||||||||||||||||||||||| ||||||||       |||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  15653378 gtggctaggagggttggagatggatctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagt 15653477  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    |||| ||||||||| | |||||| ||||||||||||| |||||||||| |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||    
T  15653478 taacggagaataagctcatgtctatggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtggga 15653577  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||  |||||||||||||||||||||||||||||||    
T  15653578 ggaggagatgttagcggagtgtagggctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 46624160 - 46623968
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||| |||||||  ||||||||       |||| ||||||||||||||||||||||||||  ||||||||||||| || ||||||||||    
T  46624160 gtggctaggagggttagagatggttctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagt 46624061  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggc 194  Q
    |||| ||||||||| | |||||||||||||||||||| |||||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||    
T  46624060 taacggagaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggc 46623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 13440475 - 13440282
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  13440475 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 13440376  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   ||||||||||||||||||| || |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  13440375 attcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 12378446 - 12378627
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| |||||||||||||| |  |||  || | || ||| |||||||||||||  ||||||||| | |||||||||||| | ||||| | ||||     
T  12378446 gataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttgttctttgtta 12378545  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggc 228  Q
    | ||| ||| |||||| | ||||| |||| |||| || |||||||||| ||||||||||||  |||||||||||||||||||    
T  12378546 agtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc 12378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
Q  168 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||||||||||| |||| || |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  111 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 210  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||  |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  211 gttagcggagtgtagggctttact 234  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  197 tgggaggaggacttgttagcggagtgtagggctttactt 235  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
Q  169 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 234  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact 41339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 7452819 - 7452581
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    |||||||||||||||||||||||  ||||||||       |||  ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  7452819 gtggctaggagggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagt 7452720  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtggga 201  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| ||||||    
T  7452719 taacggagaataagcttatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggga 7452620  T
Q  202 ggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||  || |||| ||||||||||||||||||||||||    
T  7452619 ggaggtgttattagaggagtgtagggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 16420728 - 16420918
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  16420728 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 16420827  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttct 237  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420828 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  169 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 234  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  191 tggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 13879344 - 13879390
Alignment:
Q  186 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 232  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  13879344 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 7555732 - 7555684
Alignment:
Q  184 taggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 232  Q
    |||||||||| ||||||||||| | || |||| ||||||||||||||||    
T  7555732 taggttgtgggtgtgggaggagaatttattagaggagtgtagggcttta 7555684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 45421987 - 45421748
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    ||||||||||||||||| |||||  ||||||||       |||||||||||||||||||||||||||| ||  ||||||||||||||||  |||||||||    
T  45421987 gtggctaggagggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagt 45421888  T
Q  102 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcag-tggggcgttttgtggaggtggagacgtaggttgtggctgtggg 200  Q
    |||||||||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| || |||||    
T  45421887 taacagagaataagctcatgtatgtggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtggg 45421788  T
Q  201 aggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||||  |||||||||||||||||||||| ||||||||    
T  45421787 aggaggagatgttagcggagtgtagggcttttcttcttga 45421748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 240
Target Start/End: Complemental strand, 13550551 - 13550353
Alignment:
Q  42 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 141  Q
    |||| ||||||||| ||||||| | |||| || ||||  | ||| || || |||||||||||||||||||||||| ||| |  ||||| |||||| | ||    
T  13550551 ggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttc 13550452  T
Q  142 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||| |||| |||||| ||||||||| ||| |||||| ||||||||| |||||||    
T  13550451 tgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattcttga 13550353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 26894330 - 26894522
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26894330 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26894429  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 239  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26894430 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 26899769 - 26899961
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26899769 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26899868  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 239  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26899869 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  93 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 192  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  |||||| |   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  193 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
Q  144 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||| ||||||||||| | | |||||||||||||| | |||||||| | ||||||||||||  ||||||| |||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
Q  144 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 13551004 - 13550884
Alignment:
Q  42 ggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 141  Q
    |||| ||||||||| ||||||| | |||| || ||||  | ||| || || |||||||||||||||||||||||| ||| |  ||||| |||||| | ||    
T  13551004 ggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttc 13550905  T
Q  142 tgttgattcggagcagtgggg 162  Q
    |||||||||||||||||||||    
T  13550904 tgttgattcggagcagtgggg 13550884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
Q  185 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 234  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact 36804147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
Q  185 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
Q  196 gtgggaggaggacttgttagcggagtgtagggctttact 234  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttact 36804362  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 40176951 - 40176905
Alignment:
Q  186 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 232  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  40176951 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

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Target: scaffold0418 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
Q  56 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 155  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  156 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7904  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  93 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 192  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  193 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 26205724 - 26205577
Alignment:
Q  93 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 192  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  26205724 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 26205625  T
Q  193 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  26205624 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 26205577  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 23347185 - 23347378
Alignment:
Q  47 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 146  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  23347185 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttg 23347284  T
Q  147 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23347285 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  93 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggc----gttttgtggaggtggagacgtaggt 188  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  ||||||    |   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  189 tgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 240  Q
    |||||| |||||||||||| ||| |||  ||||| |||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
Q  188 ttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 232  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta 33630334  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  169 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 232  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
Q  210 tgttagcggagtgtagggctttacttcttga 240  Q
    |||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttga 1683269  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 5041819 - 5041753
Alignment:
Q  168 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 234  Q
    ||||||||||| | ||| | |||||| |||||||||| || ||||||| |||||||||||| |||||    
T  5041819 tgtggaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattact 5041753  T

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Target: scaffold0131 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 4222 - 4337
Alignment:
Q  2 gtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagt 101  Q
    |||||| |||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4222 gtggctcggagggttggagatggagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagt 4321  T
Q  102 taacagagaataagtt 117  Q
    ||| ||||||||||||    
T  4322 taatagagaataagtt 4337  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 15490 - 15555
Alignment:
Q  169 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 234  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact 15555  T

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