View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_392 (Length: 240)

Name: NF11982A_low_392
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_392
NF11982A_low_392
[»] chr3 (3 HSPs)
chr3 (1-234)||(31506658-31506891)
chr3 (1-234)||(34495868-34496101)
chr3 (1-234)||(27607415-27607648)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31506891 - 31506658
Alignment:
Q  1 atcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactg 100  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31506891 atcttatttatgaatgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactg 31506792  T
Q  101 tcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31506791 tcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagttg 31506692  T
Q  201 gaaatactattgtccttagagctagagcaatgtc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  31506691 gaaatactattgtccttagagctagagcaatgtc 31506658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 34495868 - 34496101
Alignment:
Q  1 atcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34495868 atcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactg 34495967  T
Q  101 tcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagttg 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34495968 tcggcaacaataccagcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtcccagttg 34496067  T
Q  201 gaaatactattgtccttagagctagagcaatgtc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  34496068 gaaatactattgtccttagagctagagcaatgtc 34496101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 27607415 - 27607648
Alignment:
Q  1 atcttatttatgaacgaaggcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27607415 atcttatttatgaacgaaagcagactcagccaagtcgatggagcgagcaagaccagcagctttgttttgacattcttggtgctcatcggcagggtcactg 27607514  T
Q  101 tcggcaacaataccggcaccagcttgaaggtaagcaatccactcttggcgtttgtttaggtctttatacgagtacattgtgtcgtacctagtcccagttg 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27607515 tcggcaacaatacctgcaccagcttgaaggtaagcaatccactcttgtcgtttgtttaggtctttatacgagtacattgtatcgtacctagtcccagttg 27607614  T
Q  201 gaaatactattgtccttagagctagagcaatgtc 234  Q
    |||||||||||||||||||||||||||| |||||    
T  27607615 gaaatactattgtccttagagctagagctatgtc 27607648  T

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