View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_396 (Length: 239)
Name: NF11982A_low_396
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_396 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 18134572 - 18134424
Alignment:
| Q |
12 |
ctgaaatgaacacacatacaaacattcaaagtttcccgataacatgcatatataacatccaaggattaaaagaagaaaaaccgttcacgaacattaacca |
111 |
Q |
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| T |
18134572 |
ctgagatgcacacacatacaaacattcaaagtttcccgataacatgcatatataacatccaaggattaaaagaagaaaaaccgttcacgaacgttaacca |
18134473 |
T |
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| Q |
112 |
aatatcttaactttctgggacagttggttcatgacataactcataacag |
160 |
Q |
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| T |
18134472 |
aatatcttaactttctgggatagttggttcatgacataactcataacag |
18134424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 18133750 - 18133695
Alignment:
| Q |
165 |
aaatagaaggctgagacggtccatcttctggcacgccataataactagtattataa |
220 |
Q |
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| T |
18133750 |
aaatagaaggctgagacggtccatcttctggcacgccataataattagtattataa |
18133695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 49879979 - 49879849
Alignment:
| Q |
27 |
atacaaacattcaaagtttcccgataacatgcatatataacatccaaggattaaaagaagaaaaaccgttcacgaacattaaccaaatatcttaactttc |
126 |
Q |
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| T |
49879979 |
atacagacattcaatatttcacgataacatgcatacgtaacatccaatgattaaaagaag---aaccattcatgagctttaaccaaatagctttaccttt |
49879883 |
T |
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| Q |
127 |
tgggacagttggttcatgacataactcataacag |
160 |
Q |
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| T |
49879882 |
tggaatagttggttcatgacataaatcataacag |
49879849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 46520723 - 46520631
Alignment:
| Q |
65 |
aacatccaaggattaaaagaagaaaaaccgttcacgaacattaaccaaatatcttaactttctgggacagttggttcatgacataactcataacag |
160 |
Q |
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| T |
46520723 |
aacatccaaagattaaaagaagaa---ccattcatgagctttaaccaaaaagcttaactctctgggatagttggttcatgacataactcataacag |
46520631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 6618850 - 6618797
Alignment:
| Q |
24 |
cacatacaaacattcaaagtttcccgataacatgcatatataacatccaaggat |
77 |
Q |
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| T |
6618850 |
cacatacatacactcaaagttttacaataacatgcatatataacatccaaggat |
6618797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 6619705 - 6619755
Alignment:
| Q |
24 |
cacatacaaacattcaaagtttcccgataacatgcatatataacatccaag |
74 |
Q |
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| T |
6619705 |
cacatacaaacacttaaagttttacaataacatgcatatataacatccaag |
6619755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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