View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_4 (Length: 527)
Name: NF11982A_low_4
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 22082702 - 22083061
Alignment:
| Q |
8 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgtcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22082702 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgtcca |
22082801 |
T |
|
| Q |
108 |
agacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagnnnnnnnn |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22082802 |
agacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagtttttttt |
22082901 |
T |
|
| Q |
208 |
ctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatctg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22082902 |
ctccgctgctacttcaaattcaggtatgccttcaatgtttctgttttgccattttgtgcgataggctttgttcattcaattttactctttgcctaatctg |
22083001 |
T |
|
| Q |
308 |
tgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22083002 |
tgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc |
22083061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 19768009 - 19768368
Alignment:
| Q |
8 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgtcca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
19768009 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaacacttaagcttatatgtcca |
19768108 |
T |
|
| Q |
108 |
agacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagnnnnnnnn |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768109 |
agacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagtttttttc |
19768208 |
T |
|
| Q |
208 |
ctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatctg |
307 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768209 |
ctctgctgctacttcaaattcaggtctgccttcaatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatctg |
19768308 |
T |
|
| Q |
308 |
tgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19768309 |
tgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc |
19768368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 133 - 363
Target Start/End: Original strand, 29199652 - 29199879
Alignment:
| Q |
133 |
tgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggt |
232 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
29199652 |
tgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagtttttt---tcctctgctacttcaaattcaggc |
29199748 |
T |
|
| Q |
233 |
atgccttcaatgtttctgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctc |
332 |
Q |
| |
|
||| ||| |||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||| ||| |
|
|
| T |
29199749 |
ctgctttcgatgtttctgtttagccattttgtaggatatgctttgttcatttaattttactctttgcgtaatcgttgttgcatgcttgaatccatgactc |
29199848 |
T |
|
| Q |
333 |
tcttctttgggacttctcatgtataaatagg |
363 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
29199849 |
tcttctttaggacttctcatgtataaatagg |
29199879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 45456456 - 45456360
Alignment:
| Q |
8 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
45456456 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagttaatgtgtttttagatcgtatttgaattaagaatacttaagtttatatgt |
45456360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 426 - 497
Target Start/End: Original strand, 19768427 - 19768498
Alignment:
| Q |
426 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768427 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg |
19768498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 29199942 - 29200010
Alignment:
| Q |
429 |
tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29199942 |
tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg |
29200010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 151 - 305
Target Start/End: Complemental strand, 12572461 - 12572307
Alignment:
| Q |
151 |
gtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggtatgccttcaatgtttctg |
250 |
Q |
| |
|
||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
12572461 |
gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctt |
12572362 |
T |
|
| Q |
251 |
tttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatc |
305 |
Q |
| |
|
||| |||||||||| ||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
12572361 |
tttagccattttgtatcatatactttgttgattcaattttaatctttgcccaatc |
12572307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 151 - 305
Target Start/End: Complemental strand, 13548925 - 13548771
Alignment:
| Q |
151 |
gtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggtatgccttcaatgtttctg |
250 |
Q |
| |
|
||||| |||||||||||||| | ||||| ||||||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
13548925 |
gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctt |
13548826 |
T |
|
| Q |
251 |
tttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatc |
305 |
Q |
| |
|
||| |||||||||| ||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
13548825 |
tttagccattttgtatcatatactttgttgattcaattttaatctttgcccaatc |
13548771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 37617273 - 37616919
Alignment:
| Q |
8 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgtcca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37617273 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagcttatatgtcca |
37617174 |
T |
|
| Q |
108 |
agacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagnnnnnnnn |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37617173 |
agacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagcgtgtgttatactgcattatgtgttttgtttatgtaagtttttttc |
37617074 |
T |
|
| Q |
208 |
ctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatctg |
307 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
37617073 |
ctccgctgctacttca-----aggtctgccttcaatgtttctgtttagccattttgtgcgataggcttttttcattcaattttactctttgcctaatttg |
37616979 |
T |
|
| Q |
308 |
tgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37616978 |
tgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc |
37616919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 426 - 497
Target Start/End: Complemental strand, 37616860 - 37616789
Alignment:
| Q |
426 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37616860 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg |
37616789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 40164812 - 40164908
Alignment:
| Q |
8 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
40164812 |
atggtgttatgtatctcattttcaaattgctatatagcgttggtagttgatgtgtttttagatcgtatttgaattaagaagacttaagtttatatgt |
40164908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 133 - 305
Target Start/End: Original strand, 4351620 - 4351793
Alignment:
| Q |
133 |
tgagggagctttttctt-cgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcagg |
231 |
Q |
| |
|
|||||||||||||| || |||||| |||||||||||||| | ||||| | ||||||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
4351620 |
tgagggagctttttttttcgtggcagtcagtgtgtgttacgcggcattgtttgttttgtttatgtaagttttgttcctgcgctgctacttcaaatttagg |
4351719 |
T |
|
| Q |
232 |
tatgccttcaatgtttctgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatc |
305 |
Q |
| |
|
| ||||||| || ||||| ||| |||||||||| ||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
4351720 |
tctgccttcgatttttctttttagccattttgtatcatatactttgttgattcaattttaatctttgcccaatc |
4351793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 6921653 - 6921749
Alignment:
| Q |
8 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
6921653 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagttaatgtgtttttagatcgtatttgaattaagaatacttaagtttatatgt |
6921749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 38238225 - 38238129
Alignment:
| Q |
8 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
38238225 |
atggtgttatgtatctcattttcaaattgctatatagtgttggtagttaatgtgtttttagatcgtatttgaattaagaatacttaagtttatatgt |
38238129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 211 - 367
Target Start/End: Complemental strand, 51389734 - 51389585
Alignment:
| Q |
211 |
cgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtgt |
310 |
Q |
| |
|
|||||||||||||| |||| || |||||| ||||||||||| ||| ||||||||||||| |||||||| ||||||||| ||||| || ||| |
|
|
| T |
51389734 |
cgctgctacttcaatttcaagtctgcctttggtgtttctgtttagccgttttgtgcgatagactttgttcgttcaatttt-------gcctattcattgt |
51389642 |
T |
|
| Q |
311 |
tgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc |
367 |
Q |
| |
|
||||||| |||||||||| | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51389641 |
tgcatgcttgaatccatgaccctcttctttaggacttctcatgtataaatagggacc |
51389585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 51389526 - 51389463
Alignment:
| Q |
426 |
ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct |
489 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
51389526 |
ctctttctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccct |
51389463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 7827705 - 7827613
Alignment:
| Q |
12 |
tgttatgtatctcattttcaaattgctatatagtgttggtagtcgatgtgtttttagatcgtagttgaattaagaagacttaagcttatatgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
7827705 |
tgttatgtatctcattttcaaattgctatatagtgttggtagttgatatgtttttagattgtatttgaattaagaagacttaagtttatatgt |
7827613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 32662990 - 32663108
Alignment:
| Q |
249 |
tgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttc |
348 |
Q |
| |
|
||||| ||| |||||| |||||| |||||||||||| ||||||||||| || |||| |||||||||| ||||| ||| | ||||| ||| ||||||| |
|
|
| T |
32662990 |
tgtttagccgttttgtacgatagagtttgttcattcagttttactcttttcccaatcattgttgcatgcgtgaattcattaccctcttgtttaggacttc |
32663089 |
T |
|
| Q |
349 |
tcatgtataaatagggacc |
367 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
32663090 |
tcatgtataaatagggacc |
32663108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 489
Target Start/End: Original strand, 770534 - 770592
Alignment:
| Q |
431 |
tctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct |
489 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
770534 |
tctaaaacttctttgtttggcctttttatggatttgcatttgcgagaatttaagcccct |
770592 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 770389 - 770463
Alignment:
| Q |
266 |
cgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttcttt |
340 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||||||| ||||||||| |||||||||| | ||||||||| |
|
|
| T |
770389 |
cgatagactttgtctattcaattttactatttgcctaatcgttgttgcatgtttgaatccatgaccctcttcttt |
770463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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