View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_40 (Length: 415)
Name: NF11982A_low_40
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 219733 - 220134
Alignment:
| Q |
7 |
tgagatgaaatttgattttaaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttatcagaaaaggttgaatactttaacatcaatgccaa |
106 |
Q |
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| T |
219733 |
tgagatgaaatttgattttgaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttttcagaaaaggctgaatactttaacatcagtgccaa |
219832 |
T |
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| Q |
107 |
aacctatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtaccttttcagttgcaaaaaacctatacactaccggccgtgggaactg |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| || |
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| T |
219833 |
aacgtatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtagcttttcagttgcaaaaaaactatacactaccggtcgtgggaaatg |
219932 |
T |
|
| Q |
207 |
ttcttccaaagagcgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcggatatagtcgcattcgcaa |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
219933 |
ttcttccaaagagtgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcagatatagtcgcattcgcga |
220032 |
T |
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| Q |
307 |
agaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
220033 |
agaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtt |
220132 |
T |
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| Q |
407 |
ag |
408 |
Q |
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|| |
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| T |
220133 |
ag |
220134 |
T |
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