View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_401 (Length: 238)
Name: NF11982A_low_401
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_401 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 2902155 - 2902372
Alignment:
| Q |
1 |
tgactattcatcttacatctttgaggatagtcatatgtttctttttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaagaaagcat |
100 |
Q |
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| T |
2902155 |
tgactattccacttacatctttgaggatagtcatatgtttctttttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaagaaagcat |
2902254 |
T |
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| Q |
101 |
ggttatgaaactaattgcaaagtaaagaaacaacaaaagctgagaaagtagaatctggttatatttacctcgactgcattcataactgagttcaacaaag |
200 |
Q |
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| T |
2902255 |
ggttatgagactaattgcaaagtaaagaaacaacaaaagctgagaaagtagaatctggttatatttacctcgactgcattcataactgagttcaacaaag |
2902354 |
T |
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| Q |
201 |
ttggtaaagccctgcctc |
218 |
Q |
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|||||||||||||||||| |
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| T |
2902355 |
ttggtaaagccctgcctc |
2902372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2882855 - 2882641
Alignment:
| Q |
1 |
tgactattcatcttacatctttgaggatagtcatatgtttctttttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaag--aaagc |
98 |
Q |
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| T |
2882855 |
tgactattccacttacatctttaaggatagtcatttgtttctttctgcttgtgagaatatggagggaaatcaagatactctgaaagaccaaagaaaaaaa |
2882756 |
T |
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| Q |
99 |
atggttatgaaactaattgcaaagtaaagaaacaacaaaagctgagaaagtagaatctggttatatttacctcgactgcattcataactgagttcaacaa |
198 |
Q |
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| T |
2882755 |
aaagttatgagactaattgc-----gaaacaacaataacaactgagaaagtagaatctggttgtatttacctcgactgtgttagtaaccgagttcaacaa |
2882661 |
T |
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| Q |
199 |
agttggtaaagccctgcctc |
218 |
Q |
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| T |
2882660 |
agttggcaaagccctgcctc |
2882641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2872742 - 2872696
Alignment:
| Q |
1 |
tgactattcatcttacatctttgaggatagtcatatgtttctttttg |
47 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2872742 |
tgactattccacttacatctttaaggatagtcatatgtttctttttg |
2872696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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