View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_402 (Length: 238)
Name: NF11982A_low_402
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_402 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 36472128 - 36472337
Alignment:
| Q |
23 |
atacatctaaatatagattttatggtaaagaaaaggatagaattaaggtacctgaggagggattccaagtccaataaaaagtggccctaagataaatcct |
122 |
Q |
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| T |
36472128 |
atacatctaaatatagattttatggtaaagaaaaggatagaattaaggtacctgaggagggattccaagtccaatgaaaagtggccctaagataaatcct |
36472227 |
T |
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| Q |
123 |
ccaccaagaccaagcaagccaccgattattccagcaattatgccacatgaacaatatagaattaactgcttcacactccaatttattccttgatctccat |
222 |
Q |
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| T |
36472228 |
ccaccaagaccaagcaagccaccgattattccagcaattatgccacatgaacaatatagaattaactgcttcacactccaatttattccttgatctccat |
36472327 |
T |
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| Q |
223 |
tggaagctat |
232 |
Q |
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|||||||||| |
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| T |
36472328 |
tggaagctat |
36472337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 36463026 - 36463187
Alignment:
| Q |
71 |
tacctgaggagggattccaagtccaataaaaagtggccctaagataaatcctccaccaagaccaagcaagccaccgattattccagcaattatgccacat |
170 |
Q |
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|||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| ||| |
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| T |
36463026 |
tacctgaggagggattccaagtccaaggaagagtggcgctaagataaatcctccaccaagaccaagtaagccaccaattaagccagcaattatgccgcat |
36463125 |
T |
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| Q |
171 |
gaacaatatagaattaactgcttcacactccaatttattccttgatctccattggaagctat |
232 |
Q |
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| T |
36463126 |
gaacaatatagaattaactgcttcacactccaatttattccttgatctcccttggaagctat |
36463187 |
T |
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