View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_404 (Length: 238)
Name: NF11982A_low_404
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_404 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 31102084 - 31102306
Alignment:
| Q |
9 |
tggtgttgtcacttatcatgaaaatgttcacccaaaagtgttttatattctttgtttgtctcctaataatttctcctaagttaacgctcattccaaacag |
108 |
Q |
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| T |
31102084 |
tggtgttgtcacttatcatgaaaatgttcacccaaaagtgttttatattctttgtttgtctcctaataatttctcctaagttaacgctcattccaaacag |
31102183 |
T |
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| Q |
109 |
cgtggaaggcagaaaagtttttaccatcaacaggaaggaaaaccatttcaaaggagaatttctctaatctcaatctttgtgtattactcgaatttaggat |
208 |
Q |
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| T |
31102184 |
cgtggaaggcagaaaagtttttaccatcaacaggaaggaaaacgatttcaaaggtgaatttctctaatctcactctttgtgttttactcgaatttaggat |
31102283 |
T |
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| Q |
209 |
ttgcctaacatgaatatcacaag |
231 |
Q |
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| T |
31102284 |
ttgcctaacatgaatctcacaag |
31102306 |
T |
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