View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_405 (Length: 237)

Name: NF11982A_low_405

Description: NF11982A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11982A_low_405

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 86; E-Value: 3e-41

Query Start/End: Original strand, 22 - 186

Target Start/End: Original strand, 18729014 - 18729164

Alignment:

Q	22	ttgcttactttacacaatgtatgattgggatttcgtgccaattttaaacaatctcataccgttagattttgat--tatagttgagattcgtacctatgtg	119	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18729014	ttgcttactttacacaatgtatgattgggatttcttgtcaattttaaacaatctcataccgtt-gatttagataatatagttgagattcgtacctatgt-	18729111	T

Q	120	tcaatgtttttgcagataatctagtaatacacaatggaggattatgaaggctacttgtttaagttta	186	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18729112	--------------gataatctagtaatacacaatggaggattatgaaggctacttgtttaagttta	18729164	T

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Target: chr5; HSP #2

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 178 - 228

Target Start/End: Original strand, 18729361 - 18729411

Alignment:

Q	178	ttaagtttaaactacttctttattcaaaacttcatatattagagttttgtt	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18729361	ttaagtttaaactacttctttattcaaaacttgagatattagagttttgtt	18729411	T

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