View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_408 (Length: 237)

Name: NF11982A_low_408
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_408
NF11982A_low_408
[»] chr3 (25 HSPs)
chr3 (9-218)||(41985640-41985852)
chr3 (9-216)||(41980866-41981073)
chr3 (9-99)||(9494822-9494912)
chr3 (9-113)||(9329848-9329952)
chr3 (9-218)||(9448326-9448535)
chr3 (9-113)||(9336552-9336656)
chr3 (9-113)||(9343857-9343961)
chr3 (11-113)||(9407380-9407482)
chr3 (14-110)||(9655360-9655456)
chr3 (9-113)||(9695616-9695720)
chr3 (9-113)||(9617463-9617567)
chr3 (14-110)||(9646367-9646463)
chr3 (11-110)||(9425587-9425686)
chr3 (11-113)||(9416587-9416689)
chr3 (9-98)||(9340683-9340772)
chr3 (9-99)||(9352913-9353003)
chr3 (9-98)||(9347999-9348088)
chr3 (9-98)||(9369653-9369742)
chr3 (11-113)||(9397799-9397903)
chr3 (11-79)||(9441815-9441883)
chr3 (41-105)||(9626488-9626552)
chr3 (65-113)||(9686751-9686799)
chr3 (11-113)||(9432910-9433012)
chr3 (41-119)||(9756424-9756502)
chr3 (9-57)||(9614009-9614057)
[»] chr8 (2 HSPs)
chr8 (53-218)||(13170579-13170744)
chr8 (16-218)||(44688680-44688882)
[»] chr1 (8 HSPs)
chr1 (9-218)||(18991216-18991422)
chr1 (9-108)||(4428643-4428742)
chr1 (9-95)||(235225-235311)
chr1 (34-90)||(8814385-8814441)
chr1 (9-64)||(4439872-4439927)
chr1 (34-95)||(251412-251473)
chr1 (34-88)||(246904-246958)
chr1 (9-90)||(231593-231674)
[»] chr2 (1 HSPs)
chr2 (9-110)||(20694304-20694405)
[»] chr6 (7 HSPs)
chr6 (10-95)||(7046852-7046937)
chr6 (9-113)||(7041508-7041612)
chr6 (34-95)||(7025793-7025854)
chr6 (34-95)||(7029850-7029911)
chr6 (34-95)||(9170854-9170915)
chr6 (34-93)||(9159515-9159574)
chr6 (34-95)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (38-113)||(450111-450186)
chr7 (38-100)||(3695731-3695792)
[»] chr5 (1 HSPs)
chr5 (46-99)||(18571160-18571213)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 41985640 - 41985852
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985640 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 41985739  T
Q  109 atcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgctcactctctaccaggaatttc 205  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||    
T  41985740 atcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttc 41985839  T
Q  206 atgtcccctccat 218  Q
    |||||||||||||    
T  41985840 atgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 41980866 - 41981073
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |||| || |||||    
T  41980866 cagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacac 41980965  T
Q  109 atcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatg 208  Q
    |||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||| || |||| |||||||||||||||||||||||      
T  41980966 atcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcactctctaccaggaatttcaca 41981065  T
Q  209 tcccctcc 216  Q
    ||||||||    
T  41981066 tcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 9494912 - 9494822
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| || |||||| || ||||||||||||||||    
T  9494912 cagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 9329848 - 9329952
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    ||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || |||||    
T  9329848 cagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacac 9329947  T
Q  109 atcaa 113  Q
    |||||    
T  9329948 atcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 9448326 - 9448535
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| |||||||||||||||||||||| |||  | |||||    
T  9448326 cagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacac 9448425  T
Q  109 atcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatg 208  Q
    ||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || || | |||||| |||    
T  9448426 atcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaactaagaattttatg 9448525  T
Q  209 tcccctccat 218  Q
    ||||||||||    
T  9448526 tcccctccat 9448535  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 9336552 - 9336656
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |||||    
T  9336552 cagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacac 9336651  T
Q  109 atcaa 113  Q
    |||||    
T  9336652 atcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 9343857 - 9343961
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| ||||||||||  | |||||    
T  9343857 cagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacac 9343956  T
Q  109 atcaa 113  Q
    |||||    
T  9343957 atcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 9407380 - 9407482
Alignment:
Q  11 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 110  Q
    ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||  |||||| |||||| | || | |||||| |||||||| |||||||    
T  9407380 gaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacat 9407479  T
Q  111 caa 113  Q
    |||    
T  9407480 caa 9407482  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 9655456 - 9655360
Alignment:
Q  14 gcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 110  Q
    ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9655456 gcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 9695720 - 9695616
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    |||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||| ||    
T  9695720 cagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatac 9695621  T
Q  109 atcaa 113  Q
    |||||    
T  9695620 atcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 9617567 - 9617463
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    ||||||||||||| |||||||||||| | | ||||||||| |||||||||||| |   |||||| |||||||||||||| ||||||| ||  ||||||||    
T  9617567 cagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacac 9617468  T
Q  109 atcaa 113  Q
     ||||    
T  9617467 ttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 9646463 - 9646367
Alignment:
Q  14 gcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 110  Q
    ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| |||||||||||||||||||||| || |||||| ||||    
T  9646463 gcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatgaaatctgaaaacat 9646367  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 9425587 - 9425686
Alignment:
Q  11 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 110  Q
    ||||||||||| |||||||||||| | ||||||||||| |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425587 gaagcagaaaatgaacatccattcacaaagaacaaaaccctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 9416587 - 9416689
Alignment:
Q  11 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 110  Q
    ||||||||||| ||||||  |||| | |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | ||||||||    
T  9416587 gaagcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacat 9416686  T
Q  111 caa 113  Q
    |||    
T  9416687 caa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 9340683 - 9340772
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 98  Q
    |||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340683 cagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 9352913 - 9353003
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 99  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |   |||||| ||||| ||||||||| ||||||||||    
T  9352913 cagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttcaacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 9347999 - 9348088
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 98  Q
    |||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9347999 cagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 9369653 - 9369742
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 98  Q
    |||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9369653 cagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 9397799 - 9397903
Alignment:
Q  11 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacac 108  Q
    ||||| ||||| |||||||||||| | |||||||| || |||||||||||||||  |||||| || ||  ||| || | |||||| |||||||| |||||    
T  9397799 gaagcggaaaatgaacatccattcacaaagaacaagaccctatcccctaaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacac 9397898  T
Q  109 atcaa 113  Q
    |||||    
T  9397899 atcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 9441883 - 9441815
Alignment:
Q  11 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccat 79  Q
    ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| ||||||    
T  9441883 gaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccat 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 9626552 - 9626488
Alignment:
Q  41 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaa 105  Q
    |||||||| |||||||||||| ||  ||| || |||||||||||||||||||||| || ||||||    
T  9626552 aacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  65 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 113  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 9432910 - 9433012
Alignment:
Q  11 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 110  Q
    ||||||||||| ||| || ||  ||| | ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| ||||    
T  9432910 gaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacat 9433009  T
Q  111 caa 113  Q
    |||    
T  9433010 caa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 9756424 - 9756502
Alignment:
Q  41 aacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagcttta 119  Q
    |||||||| |||||||| ||| || |||||||||||||  | ||||| ||||||||||| ||  ||||||||| |||||    
T  9756424 aacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatcaagcctatacacatcaatcttta 9756502  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 9614057 - 9614009
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 57  Q
    ||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614057 cagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

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Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  53 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 152  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  153 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 218  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 44688882 - 44688680
Alignment:
Q  16 agaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagc 115  Q
    |||||| ||| || |||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | ||||||||  ||  ||||||||||||||    
T  44688882 agaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctcattgagcgtgaacacatcaagc 44688783  T
Q  116 tttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctc 215  Q
      || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  44688782 cgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctctaccaggaattttatgtcccctc 44688683  T
Q  216 cat 218  Q
    |||    
T  44688682 cat 44688680  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 18991216 - 18991422
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||   |||||| ||| || |||||    
T  18991216 cagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttctttctctcattaagcctaaacac 18991312  T
Q  109 atcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatg 208  Q
     |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| |||||||| |||||||||     
T  18991313 cttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcata 18991412  T
Q  209 tcccctccat 218  Q
    ||||||||||    
T  18991413 tcccctccat 18991422  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 4428643 - 4428742
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    |||| ||||||||| |||||||||||||||| |||||||| |||||||| ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428643 cagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 235225 - 235311
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 95  Q
    ||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235225 cagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 8814441 - 8814385
Alignment:
Q  34 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 90  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  8814441 ccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 4439872 - 4439927
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 64  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  4439872 cagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 251473 - 251412
Alignment:
Q  34 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 95  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251473 ccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 246904 - 246958
Alignment:
Q  34 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 88  Q
    |||||||||||||||| |||| |||||| | |||||||| |||||||||||||||    
T  246904 ccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 231593 - 231674
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 90  Q
    ||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231593 cagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 20694405 - 20694304
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||  | ||||||||||||||||| |||||||| ||||||||    
T  20694405 cagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtcaaactcacccatttcttctccttttcatcaagcctgaacac 20694306  T
Q  109 at 110  Q
    ||    
T  20694305 at 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 7046852 - 7046937
Alignment:
Q  10 agaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 95  Q
    |||||||||||||||||||    ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046852 agaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 7041508 - 7041612
Alignment:
Q  9 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 108  Q
    ||||| |||| ||||||||| | |  |||||||||||||| |||||||||||||| | |||||| ||||| |||||||||||||||| |||| | ||||     
T  7041508 cagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaa 7041607  T
Q  109 atcaa 113  Q
    |||||    
T  7041608 atcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 7025793 - 7025854
Alignment:
Q  34 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 95  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  34 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 95  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  34 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 95  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  34 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 93  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 7012857 - 7012918
Alignment:
Q  34 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 95  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||||| ||||||||||||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 450186 - 450111
Alignment:
Q  38 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 113  Q
    |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || ||||||||||    
T  450186 aagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 3695731 - 3695792
Alignment:
Q  38 aagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagt 100  Q
    |||||||||||||||||||||||||||  ||||||||  || ||||||| |||||||| ||||    
T  3695731 aagaacaaaactctatcccctaaactctacaacttga-tcacttcttcttcttctcattaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 18571160 - 18571213
Alignment:
Q  46 aactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 99  Q
    |||| ||||||||||||||| ||| || ||||| ||||||||||||||||||||    
T  18571160 aactgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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