View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_41 (Length: 414)
Name: NF11982A_low_41
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_41 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 37766244 - 37765842
Alignment:
| Q |
8 |
gacacttccaccttctataactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
37766244 |
gacacttccaccttctataactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgatggatcggagttcctcctacccgatacaacc |
37766145 |
T |
|
| Q |
108 |
tcgaaaagcatcattccgtagctataagcatcggcttcggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatgg |
207 |
Q |
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||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37766144 |
tcgaaaagcatcattccgtagctataaacatcagctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatgg |
37766045 |
T |
|
| Q |
208 |
ttgttaggaccctgctgaaatctcgtccgaccagc---ccgcggccaaagtctgcaactttaggacaaaaatcggtgtctaggagaatgttttctggctt |
304 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37766044 |
ttgttaggaccctgctgaaatctcgtccgaccagcttagccaggccaaagtctgcaactttaggacaaaaatcggtgtctaggagaatgttttctggctt |
37765945 |
T |
|
| Q |
305 |
tacatcgcagtgtatgatacagtctcggcacttctcgtggaggtatgttaatccccttgcaattccaatagcaatttggtatctcagtttccagtccaac |
404 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37765944 |
tacatcacagtgtatgatacagtctcggcacttctcgtggaggtatgttaatccccttgcaattccaatagcaatttggtatctcagtttccagtccaac |
37765845 |
T |
|
| Q |
405 |
acc |
407 |
Q |
| |
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||| |
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| T |
37765844 |
acc |
37765842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 25 - 407
Target Start/End: Original strand, 37799519 - 37799904
Alignment:
| Q |
25 |
taactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattcc |
124 |
Q |
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|||||||| | ||||| ||||| |||||||||||| ||| ||||| | || ||||| || ||||| |||||||||||||||| |||||||||||||| |
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| T |
37799519 |
taactactgtagcagccaaggttggaaagaaagtattttggtcatctgcagatggatcagaattccttttacctgatacaacctcaaaaagcatcattcc |
37799618 |
T |
|
| Q |
125 |
gtagctataagcatcggcttcggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatggttgttaggaccctgctg |
224 |
Q |
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|| || ||| |||| | || |||||| ||||| | | ||| |||||||| || | ||| |||||||||| |||| |||| |||| |||| || ||| |
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| T |
37799619 |
ataactgtaaacatcagatttggctgtgatagcagccctagatatccactctggggaaagatagcctcttgatccttccatgtttgtaaggattcttctg |
37799718 |
T |
|
| Q |
225 |
aaatctcgtccgaccagcc---cgcggccaaagtctgcaactttaggacaaaaatcggtgtctaggagaatgttttctggctttacatcgcagtgtatga |
321 |
Q |
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||||||||||| | | | | ||||||||||||||||| ||||||||||| | || |||||||||||||||||||||| ||| |||||||||| |
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| T |
37799719 |
aaatctcgtccaattaacttagctacaccaaagtctgcaacttttggacaaaaatcagcatcaaggagaatgttttctggctttatatcacagtgtatga |
37799818 |
T |
|
| Q |
322 |
tacagtctcggcacttctcgtggaggtatgttaatccccttgcaattccaatagcaatttggtatctcagtttccagtccaacacc |
407 |
Q |
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|||| ||| ||| |||||||| ||||| ||| ||| || |||||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
37799819 |
tacattcttcgcatttctcgtgtaggtaaattagtcctctagcaattccaagagcaatttggtatctcattttccaacccaacacc |
37799904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 33 - 403
Target Start/End: Complemental strand, 16407 - 16034
Alignment:
| Q |
33 |
tttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattccgtagctat |
132 |
Q |
| |
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||||||||||||||||||||||| |||| || |||||||| |||||||||||||| || |||||||| || | |||||||||||||||||||||||| | |
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| T |
16407 |
tttgcagctaaggtaggaaagaatctaacatggccatcttcagaaggatcggagtttcttctacctgacactagctcgaaaagcatcattccgtagctgt |
16308 |
T |
|
| Q |
133 |
aagcatcggcttcggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatggttgttaggaccctgctgaaatctcg |
232 |
Q |
| |
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|| ||||||||| || || ||||| || || ||||||||||| ||||| || ||||||||||||||||||||||| || ||||||| |||||| || | |
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| T |
16307 |
aaacatcggctttagcggttatagcaactcctgaaatccactctggagctagatagcctcttgttcctctcatggtagtgaggacccggctgaagtccct |
16208 |
T |
|
| Q |
233 |
tccgaccagc---ccgcggccaaagtctgcaactttaggacaaaaatcggtgtctaggagaatgttttctggctttacatcgcagtgtatgatacagtct |
329 |
Q |
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|||||| ||| | |||| |||||||||||||| ||||||||||| | |||| |||||||||||||||||| || |||||||| |||||||||||| |
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| T |
16207 |
tccgacaagctttgcaaggccgaagtctgcaacttttggacaaaaatcagaatctatgagaatgttttctggcttcacgtcgcagtgaatgatacagtct |
16108 |
T |
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| Q |
330 |
cggcacttctcgtggaggtatgttaatccccttgcaattccaatagcaatttggtatctcagtttccagtccaa |
403 |
Q |
| |
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| ||||| || || || ||||| |||||||| || ||||| | ||||||||||||||| | |||||| ||||| |
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| T |
16107 |
ctacacttttcatgaagatatgtcaatcccctagctattcccagagcaatttggtatcttactttccactccaa |
16034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 38388258 - 38388077
Alignment:
| Q |
33 |
tttgcagctaaggtaggaaagaaagtaacttgaccatctt----ctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattccgtag |
128 |
Q |
| |
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|||||||| || ||||||||||| |||| || ||||||| | |||||||| ||||| || || ||||| || | ||||||||||||||||| |||| |
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| T |
38388258 |
tttgcagccaaagtaggaaagaatctaacatggccatcttaattcggaaggatcagagtttcttcttcctgacacgagctcgaaaagcatcattctgtag |
38388159 |
T |
|
| Q |
129 |
ctataagcatcggcttcggctgtaatagccacgccagaaatccac---tccggagcaaggtagcctcttgttcctctcatgg |
207 |
Q |
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| ||| ||||||||| || || |||| || || ||||||||| || ||||| || |||||||||||||||||||||| |
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| T |
38388158 |
ttgtaaacatcggctttagcggttatagaaactcccgaaatccactcatctggagctagatagcctcttgttcctctcatgg |
38388077 |
T |
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