View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_411 (Length: 236)
Name: NF11982A_low_411
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_411 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 56069300 - 56069552
Alignment:
| Q |
1 |
gaagcaagccatgtatacaaaaagaataataaattatataatggattgcaa-------------ttgacctttattatggatggatgttgcattctcgca |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
56069300 |
gaagcaagccatgtatacaaaaagaataataaattatataatggattgcaacctataaggtgcattgacctttattatggatggatgttgcattctcgca |
56069399 |
T |
|
| Q |
88 |
aatacacagaatcataatgaacgtccttcgtccaataaccttgaaacttttgaatacttatctcgatccatggtttcatatttccat----tatagtgtg |
183 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
56069400 |
aatacacagaatcataatgaatgtacttcgtccaataaccttgaaacttttgaatacttatctcgagccatggtttcatatttccattatatatagtgtg |
56069499 |
T |
|
| Q |
184 |
tattacagcagcactttcgatatctttttggttgacatcagggttgtagccaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56069500 |
tattacagcagcactttcgatatctttttggttgacatcagggttgtagccaa |
56069552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 38398961 - 38398787
Alignment:
| Q |
60 |
tattatggatggatgttgcattctcgcaaatacacagaatcataatgaacgtccttcgtccaataaccttgaaacttttgaatacttatctcgatccatg |
159 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||| || ||||||| ||| | ||||||||||||||||| |||||| | ||||||||||| | ||| | |
|
|
| T |
38398961 |
tattattgattgatattgcattctcgcaaatactcactctcataatcaacatacttcgtccaataacctttaaacttcggtatacttatctccagccacg |
38398862 |
T |
|
| Q |
160 |
gtttcatatttccattatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaa |
236 |
Q |
| |
|
|||||| ||||| ||||| ||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
38398861 |
gtttcaagtttccgttata--gtgaattacagcagccctttcaatatctttttggttgacattggggttgtagccaa |
38398787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 10171266 - 10171098
Alignment:
| Q |
66 |
ggatggatgttgcattctcgcaaatacacagaatcataatgaacgtccttcgtccaataaccttgaaacttttgaatacttatctcgatccatggtttca |
165 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| || ||| | || | ||| ||||| |||||| |||||| ||||||||||||| | |||||| |||| |
|
|
| T |
10171266 |
ggattgatgttgcattctcgcaaatagacatgattatagttgacatactttgtccagtaacctctaaacttgggaatacttatctccaaccatggcttca |
10171167 |
T |
|
| Q |
166 |
tatttccattatagtgtgtattacagcagcactttcgatatctttttggttgacatcagggttgtagccaa |
236 |
Q |
| |
|
| || ||||| || ||| || |||||||| | || ||||||||||||||||| | || |||||||||| |
|
|
| T |
10171166 |
tgttcccattgta--gtgcataacagcagcccgatcaatatctttttggttgacgttgggattgtagccaa |
10171098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University