View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_414 (Length: 235)

Name: NF11982A_low_414
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_414
NF11982A_low_414
[»] chr8 (12 HSPs)
chr8 (16-214)||(17722420-17722608)
chr8 (16-202)||(35948827-35949013)
chr8 (16-202)||(7956340-7956516)
chr8 (16-202)||(44223327-44223503)
chr8 (65-202)||(9505015-9505153)
chr8 (44-149)||(3767684-3767789)
chr8 (44-202)||(16570890-16571047)
chr8 (65-202)||(32321799-32321936)
chr8 (44-194)||(34760834-34760975)
chr8 (27-101)||(9040513-9040587)
chr8 (150-202)||(9040427-9040479)
chr8 (117-153)||(8266063-8266099)
[»] chr1 (12 HSPs)
chr1 (16-202)||(16584864-16585050)
chr1 (16-148)||(25785805-25785937)
chr1 (16-194)||(8083994-8084173)
chr1 (16-178)||(1161433-1161594)
chr1 (16-147)||(11619973-11620104)
chr1 (16-200)||(18461120-18461295)
chr1 (44-202)||(42009997-42010155)
chr1 (44-194)||(512961-513111)
chr1 (110-203)||(32678514-32678607)
chr1 (112-194)||(8414674-8414756)
chr1 (19-157)||(11911629-11911768)
chr1 (112-179)||(27320560-27320627)
[»] chr4 (7 HSPs)
chr4 (23-202)||(23107918-23108097)
chr4 (16-199)||(4413456-4413640)
chr4 (16-203)||(24466315-24466502)
chr4 (16-180)||(28319290-28319454)
chr4 (65-194)||(53393204-53393333)
chr4 (65-199)||(8606181-8606315)
chr4 (113-202)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (26-203)||(16746550-16746727)
chr5 (30-202)||(31895896-31896068)
chr5 (16-199)||(19947711-19947894)
chr5 (16-143)||(16746421-16746548)
chr5 (65-180)||(1498243-1498358)
chr5 (51-194)||(29126091-29126234)
chr5 (154-192)||(41092125-41092163)
chr5 (111-171)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (16-203)||(580-767)
[»] chr7 (13 HSPs)
chr7 (16-202)||(7352370-7352555)
chr7 (16-203)||(39695086-39695268)
chr7 (16-141)||(46993309-46993434)
chr7 (19-149)||(7994998-7995128)
chr7 (16-147)||(11727328-11727449)
chr7 (44-202)||(48070614-48070772)
chr7 (65-202)||(3996991-3997128)
chr7 (66-170)||(46265353-46265457)
chr7 (30-170)||(2922986-2923125)
chr7 (111-194)||(12013026-12013109)
chr7 (51-202)||(27226938-27227089)
chr7 (138-194)||(12471855-12471911)
chr7 (138-190)||(35738239-35738291)
[»] chr3 (12 HSPs)
chr3 (16-202)||(46655514-46655701)
chr3 (51-199)||(44471020-44471168)
chr3 (27-203)||(11503337-11503513)
chr3 (51-203)||(30554574-30554726)
chr3 (105-194)||(46892612-46892701)
chr3 (65-166)||(27524053-27524154)
chr3 (51-147)||(779533-779629)
chr3 (106-194)||(23307117-23307205)
chr3 (137-200)||(12937849-12937912)
chr3 (44-202)||(26757593-26757751)
chr3 (71-157)||(44285605-44285691)
chr3 (102-202)||(23659401-23659501)
[»] chr2 (11 HSPs)
chr2 (23-202)||(31111413-31111592)
chr2 (16-149)||(4638207-4638340)
chr2 (23-200)||(13852276-13852453)
chr2 (44-202)||(29109190-29109348)
chr2 (18-190)||(3919857-3920029)
chr2 (16-83)||(36009278-36009345)
chr2 (83-202)||(12893980-12894099)
chr2 (71-157)||(37630375-37630461)
chr2 (27-149)||(38607020-38607141)
chr2 (65-194)||(5526225-5526353)
chr2 (116-203)||(30906942-30907029)
[»] scaffold0565 (1 HSPs)
scaffold0565 (16-142)||(1844-1970)
[»] chr6 (7 HSPs)
chr6 (66-199)||(7176529-7176662)
chr6 (65-172)||(23301441-23301548)
chr6 (112-202)||(11971456-11971546)
chr6 (44-172)||(23300455-23300583)
chr6 (45-147)||(7551423-7551525)
chr6 (71-192)||(9826747-9826868)
chr6 (65-142)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (112-202)||(33729-33819)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 17722420 - 17722608
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17722420 atcatcggattggttcatcggtttcacagatctcgaaatgaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 17722519  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctatctctcgttgat 214  Q
    ||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  17722520 gaaccaaacaaggttggatatttt----------tccggtttggactttcggtttcattggttttatccgaaccatttacacccctatctctcgttgat 17722608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 35949013 - 35948827
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||| ||| || |  ||||||| |||||||||||    
T  35949013 atcatcggattggttcatcggtttcatggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaacc 35948914  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    ||||||||||| || ||||||||||| | ||||||||  |||||||||||| |||| |||||||| | |||| |||||| |||||||    
T  35948913 gaaccaaacaaagtcggatatttttttgttttggttcaatttggactttcgttttcgttggttttgtccgaaacacttacaccccta 35948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 7956340 - 7956516
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  7956340 atcatcggattggttcatcggtttcacatatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaacc 7956439  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
     ||| || |||||| | |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  7956440 aaacaaagcaaggtcgaatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 7956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 44223327 - 44223503
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||| ||||| ||||     
T  44223327 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggttttaaact 44223426  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||||||| |   |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  44223427 gaaccaaacaagatcatatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 44223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 202
Target Start/End: Complemental strand, 9505153 - 9505015
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatatttttt-cggtttggttcggtttggactt 163  Q
    ||||| |||||||||| |||||||| | || |||||| | | |||  || ||||||||||||||||||||||||||| || ||||||| |||||||| ||    
T  9505153 gaaccgaaccaaactatatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattt 9505054  T
Q  164 tcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||||| |||||||| | ||||||||| |||||||    
T  9505053 tcggtttcatcggttttatccaaaccacttacaccccta 9505015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 3767684 - 3767789
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||| |||| |||||| | |||||  |||||||| ||||||||| ||||| |||||||    
T  3767684 gatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcg 3767783  T
Q  144 gtttgg 149  Q
    ||||||    
T  3767784 gtttgg 3767789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 16570890 - 16571047
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||| |||||||  ||||| ||||||| ||||||||||| | || ||| || | |||||  |||| ||||||||||||||||||||||||| |    
T  16570890 gatctcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggatatttttt-g 16570988  T
Q  144 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    ||||||||||||||| | ||| | |||||| |||||| | | ||||| ||| |||||||    
T  16570989 gtttggttcggtttgaatttttgatttcatcggttttgtccaaaccaattacaccccta 16571047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 202
Target Start/End: Complemental strand, 32321936 - 32321799
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 164  Q
    ||||| ||||||| |||||||||||   ||  ||||| ||| ||| ||||||||||||||||||| | ||| |||||||||||| || ||||| |  |||    
T  32321936 gaaccgaaccaaattagatcggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcgaatactttttcggtttgatttggtttaggtttt 32321837  T
Q  165 cggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||||  ||||||| ||||||||||  |||||||    
T  32321836 cggtttcatcagttttatccgaaccacttgcaccccta 32321799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 34760834 - 34760975
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||| ||||| || ||||||||||||||||||||||||| | || |||||| | | |||  |||||||||||||||| |  |||| |||||      
T  34760834 gatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatacttttt-- 34760931  T
Q  144 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
           |||||||||| |||||||||||| |||||| |||||||| ||||    
T  34760932 -------tcggtttggattttcggtttcatcggttttgttcgaaccgctta 34760975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 9040587 - 9040513
Alignment:
Q  27 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcgg 101  Q
    ||||||||||||||  ||||||| |||| ||||| |  |||||||||||||| |||||||||| |||| ||||||    
T  9040587 ggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcgg 9040513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 9040479 - 9040427
Alignment:
Q  150 ttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||| |||||||    
T  9040479 ttcggtttggactttcgatttcatcggttttatccgaaccgcttataccccta 9040427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 8266099 - 8266063
Alignment:
Q  117 aaccaaacaaggttggatattttttcggtttggttcg 153  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  8266099 aaccaaataaggttggatactttttcggtttggttcg 8266063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 16584864 - 16585050
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16584864 atcatcagattggttcatcggtttcacggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaacc 16584963  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  16584964 gaaccaaacaaggttggatattttttcgttttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 16585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 25785937 - 25785805
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  25785937 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaacc 25785838  T
Q  116 gaaccaaacaaggttggatattttttcggtttg 148  Q
    |||||||||||||| ||||||||||||||||||    
T  25785837 gaaccaaacaaggtcggatattttttcggtttg 25785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 8084173 - 8083994
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||||||||| |||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8084173 atcatcggattgattcatcagtttcacggatcttgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcggattggtttcaaacc 8084074  T
Q  116 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
     ||||||||||||| ||||||| ||||||||||| ||  ||||||||||||| |||| |||||| | | |||||||||||    
T  8084073 aaaccaaacaaggtcggatatttttttcggtttgatttagtttggactttcgatttcgttggttatgtccgaaccactta 8083994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 1161433 - 1161594
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||    
T  1161433 atcatcggattggttcatcggtttcacggatatcgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggcttggattggtttcaaacc 1161532  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtt 178  Q
    |||||||| ||||| ||||| |||||||||||||||||||||  ||||| | |||| ||||||    
T  1161533 gaaccaaataaggtcggata-tttttcggtttggttcggtttaaacttttgatttcgttggtt 1161594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 11620104 - 11619973
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||     
T  11620104 atcatcggattggttcatcggtttcacagatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattagtttggatcggtttcaaact 11620005  T
Q  116 gaaccaaacaaggttggatattttttcggttt 147  Q
    |||||||||||| | ||||||||||| |||||    
T  11620004 gaaccaaacaagatcggatatttttttggttt 11619973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 18461295 - 18461120
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| || | ||| | ||| |||||    
T  18461295 atcatcggattggttcatcggtttcacggatctcgaaataaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaacc 18461196  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 200  Q
    |||| ||||||||| |||||         ||||||| |||||||||||| |||||| |||||||| || |||||||||| |||||    
T  18461195 gaactaaacaaggtcggata---------tttggtttggtttggacttttggtttcgttggttttgtttgaaccacttacacccc 18461120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 42009997 - 42010155
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||| ||||| |||||  ||||| |||||||||||||||| ||| ||| |||| |||||||||||||||||||||| || |||||||||||||    
T  42009997 gatctcaaaatgaaaaaccatgagtcaaactaaactagatcggtttcaattggtttggatcggtttcaaaccgaaccaaacaatgtcggatattttttcg 42010096  T
Q  144 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    ||||||| | ||||||||| |||||||| ||||||| || |||||| |||| |||||||    
T  42010097 gtttggtccagtttggactatcggtttcgttggtttaatccgaaccgcttacaccccta 42010155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 513111 - 512961
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||| |||||| | ||| | || |||||||||||||||| | || |||||| |||||||  |||||||||||||||| ||||||| |||||||    
T  513111 gatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaagattggatactttttcg 513012  T
Q  144 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
    |||||||||| |||||  ||| | ||||||  ||||| | |||||||||||    
T  513011 gtttggttcgatttgggtttttgatttcatcagttttgtccgaaccactta 512961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 32678514 - 32678607
Alignment:
Q  110 caaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 203  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||| | ||||| |||||| |||||| ||||||||||||| ||| ||||    
T  32678514 caaaccaaaccaaacaaggtcggatattttttcggcttagttcggtttgaattttcgatttcatcggttttgttcgaaccacttacacctctat 32678607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 8414674 - 8414756
Alignment:
Q  112 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||| |||| ||||||| |||||| | |||||||||||    
T  8414674 aaccaaaccaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccactta 8414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 11911768 - 11911629
Alignment:
Q  19 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 118  Q
    ||||| ||||||||||||||   | ||| || |||| ||||| || |||| ||| |||||||||||||||| | || |||||| | |||||  |||||||    
T  11911768 atcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaa 11911669  T
Q  119 ccaaacaaggttggata-ttttttcggtttggttcggttt 157  Q
    ||||||||||| ||||| ||||||||  |||||| |||||    
T  11911668 ccaaacaaggtcggatacttttttcgaattggtttggttt 11911629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 27320560 - 27320627
Alignment:
Q  112 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttt 179  Q
    |||||||||||||||||| ||||| ||||| | |||| ||| |||| || |||||||||||| |||||    
T  27320560 aaccgaaccaaacaaggtcggatacttttttgatttgattcagtttagattttcggtttcatcggttt 27320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 23107918 - 23108097
Alignment:
Q  23 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 122  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  23107918 gattggttcatcggtttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaa 23108017  T
Q  123 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  23108018 acaaggtcggatatttttcctgtttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 23108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 4413640 - 4413456
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||    
T  4413640 atcatcggattggtttatcggtttcacggatctcgaaatgaaaaaccatgaaccaaagcaaactagatcggtttcgattggttcggatcggttttaaacc 4413541  T
Q  116 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 199  Q
    |||||||||||| | ||||||| |||||||| | |||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||    
T  4413540 gaaccaaacaagatcggatatttttttcggtctagttcagtttgaacttttggtttcgttggttttatccgaaccacttacaccc 4413456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 24466315 - 24466502
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  24466315 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 24466414  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 203  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  24466415 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 24466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 28319290 - 28319454
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||| ||||| |||||| | |||||  |||||||||| ||||| |||||||||||||||| || |||| ||| |||| |||||||  |||||||||||    
T  28319290 atcatcagattgattcatcaggttcacgaatctcgaaatgaaaaaccatgaaccaaaccaaattaaatcgattttgattggttcggaacggtttcaaacc 28319389  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtttt 180  Q
    ||||||||||| ||  |||||||||||||||||||||| ||| |||||||| |||| ||||||||    
T  28319390 gaaccaaacaatgtcagatattttttcggtttggttcgatttagactttcgatttcgttggtttt 28319454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 53393204 - 53393333
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 164  Q
    ||||| ||||||||||||||||||| | || |||||| |  |||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||    
T  53393204 gaaccgaaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggatttt 53393303  T
Q  165 cggtttcattggttttattcgaaccactta 194  Q
    ||||||||| |||||| | |||||||||||    
T  53393304 cggtttcatcggttttgtccgaaccactta 53393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 8606181 - 8606315
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 164  Q
    ||||| |||||| | |||||||||| |||| |||||  |||||||  |||||| |||||||| |||||||| |||||||||||||||   ||| |||| |    
T  8606181 gaaccgaaccaaccaagatcggtttagattggttcgatttggttttgaaccgagccaaacaaagttggatactttttcggtttggtttaattttgactat 8606280  T
Q  165 cggtttcattggttttattcgaaccacttaaaccc 199  Q
    | ||||| | |||||| | ||||||||||| ||||    
T  8606281 cagtttcgtcggttttgtccgaaccacttacaccc 8606315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 39839064 - 39839153
Alignment:
Q  113 accgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||||||||||||   ||| |||||| ||||| || |||||||| |||||||||||| |||||  | ||||||||||| |||||||    
T  39839064 accgaaccaaacaaggtcaaatactttttcagtttgatttggtttggattttcggtttcatcggtttcgtccgaaccacttacaccccta 39839153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 16746550 - 16746727
Alignment:
Q  26 tggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaaca 125  Q
    |||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  16746550 tggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaaca 16746649  T
Q  126 aggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 203  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| | ||||||||||| | ||||||    
T  16746650 aggttggatattttttcgatttggttcggtttagactttcggtttcgttggttttgtccgaaccacttacatccctat 16746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 31896068 - 31895896
Alignment:
Q  30 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 129  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||    
T  31896068 tcatcggtttcacggatcacgaaataaaaaatcatgaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggt 31895969  T
Q  130 tggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
     |||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |||||||    
T  31895968 cggatattttttcggtttggttcagtttggactttcgattttgttggttttgtccgaaccacttacaccccta 31895896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 19947894 - 19947711
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| |||| |||||| | ||||||| ||| |||| ||||||||||     
T  19947894 atcatcggattggttcatcggtttcacggatcttgaaatgaaaaaccatgaaccaaatcaaagtagatcagattcgattggtttggatcggtttcaaact 19947795  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 199  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||| |||| | ||||||||||| ||||    
T  19947794 gaaccaaacaatgtcggatattttttcggtttggttcggtttggactttcggattcgttgattttgtccgaaccacttacaccc 19947711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 16746421 - 16746548
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||    
T  16746421 atcatcggattggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaacc 16746520  T
Q  116 gaaccaaacaaggttggatattttttcg 143  Q
    ||||||||||||||||||||||||||||    
T  16746521 gaaccaaacaaggttggatattttttcg 16746548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 1498243 - 1498358
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 164  Q
    |||||||||  ||||| |||||||| | || |||| | | |||||  |||||||||||||||||| ||||||||| || ||||| ||||||||||| |||    
T  1498243 gaaccaaacttaactacatcggtttaggttggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggatttt 1498342  T
Q  165 cggtttcattggtttt 180  Q
    ||||||||| ||||||    
T  1498343 cggtttcatcggtttt 1498358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 29126234 - 29126091
Alignment:
Q  51 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 150  Q
    |||||||||||   ||||||||| |||||||| |||||| | || |||  | | |||||||||| || ||||||||  | ||||| ||||||||||||||    
T  29126234 aaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaactgacccaaacaaaatcggatactttttcggtttggt 29126135  T
Q  151 tcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
    |||||||  | | ||  |||| |||||||| | |||||||||||    
T  29126134 tcggtttaaattctccatttcgttggttttgtccgaaccactta 29126091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 41092125 - 41092163
Alignment:
Q  154 gtttggactttcggtttcattggttttattcgaaccact 192  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41092125 gttttgactttcggtttcattggttttgttcgaaccact 41092163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 30126223 - 30126283
Alignment:
Q  111 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttc 171  Q
    |||| |||||||||||||| | |||||||||  ||||| ||||||||||| ||||| ||||    
T  30126223 aaacagaaccaaacaaggtcgaatattttttttgtttgattcggtttggagtttcgatttc 30126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 580 - 767
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  580 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 679  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 203  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  680 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 7352370 - 7352555
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  7352370 atcatcggattgatt-atcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaacc 7352468  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
     ||||||| || || |||||||||||||||| |||| | ||||||||||||||||| |||||||| |  |||||| ||| |||||||    
T  7352469 aaaccaaataaagtcggatattttttcggttcggtttgatttggactttcggtttcgttggttttgtctgaaccaattacaccccta 7352555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 39695268 - 39695086
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||    
T  39695268 atcatcagattggttcatcggtttcacggacctcgaaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaacc 39695169  T
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 203  Q
    |||||||||||||| |||||| | ||||||||     || |||||||||||||||| ||||||||   ||||||||||| ||||||||    
T  39695168 gaaccaaacaaggtcggatatctcttcggttt-----gggttggactttcggtttcgttggttttgcccgaaccacttacacccctat 39695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 46993434 - 46993309
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||  |||||||   |||||||||    
T  46993434 atcatcggattggttaatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcggatcaatttcaaacc 46993335  T
Q  116 gaaccaaacaaggttggatatttttt 141  Q
    || ||||||||||| | |||||||||    
T  46993334 gacccaaacaaggtcgaatatttttt 46993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 7995128 - 7994998
Alignment:
Q  19 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 118  Q
    ||||||||||||||||||||||||  ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||||||| | |||  |||||||    
T  7995128 atcggattggttcatcggtttcacgaatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaa 7995029  T
Q  119 ccaaacaaggttggatattttttcggtttgg 149  Q
    |||||||||||   |||||||||| ||||||    
T  7995028 ccaaacaaggtcaaatattttttcagtttgg 7994998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 11727328 - 11727449
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||| |||||||| || ||||||||||| ||||| || |||||||||||||||||||||||||           |||||||||||||||    
T  11727328 atcatcggattggtttatcggttttacggatctcgaaatgaaaaaccacgaaccaaaccaaactagatcggttt----------tgattggtttcaaacc 11727417  T
Q  116 gaaccaaacaaggttggatattttttcggttt 147  Q
    ||||||||||||||   |||||||||||||||    
T  11727418 gaaccaaacaaggtcatatattttttcggttt 11727449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 48070772 - 48070614
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||| ||||| |  ||||| || |||||||||||||||| | ||||||||| | |||||  |||| || |||||||||| ||||||||||| |    
T  48070772 gatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggttttgaaccaaatcaaacaaggtcggatatttttttg 48070673  T
Q  144 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||| ||||||||| || ||||||||| || | |||| | ||||||||||| |||||||    
T  48070672 gtttagttcggtttagattttcggtttgatcgattttgtccgaaccacttacaccccta 48070614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 3996991 - 3997128
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 164  Q
    ||||| |||||||| || | ||||| |||| ||| || | |||||  |||| |||||||||| || ||||  || ||||||||||| |||||||||||||    
T  3996991 gaaccgaaccaaacaaggttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggattcttcttcggtttggtacggtttggacttt 3997090  T
Q  165 cggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||||||||||| | ||||||||||| |||||||    
T  3997091 cggtttcattggttttgtccgaaccacttacaccccta 3997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 46265353 - 46265457
Alignment:
Q  66 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 165  Q
    ||||||||||||| |||||||||| ||||  ||||| | |||||  |||||||||  ||||||| |||||  |||| |||||||||||||||||||||||    
T  46265353 aaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacatttttggtttggttcggtttggactttc 46265452  T
Q  166 ggttt 170  Q
    |||||    
T  46265453 ggttt 46265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 2923125 - 2922986
Alignment:
Q  30 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 129  Q
    |||||||||||   |||||| |||| |||||||| ||||| || ||||| || ||||| | |||| |||||| | |||||  |||||||||| |||||||    
T  2923125 tcatcggtttcttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggt 2923026  T
Q  130 tggatattttttcggtttggttcggtttggactttcggttt 170  Q
    || |||  |||| |||||||||| |||||||||||||||||    
T  2923025 tgaatacatttttggtttggttc-gtttggactttcggttt 2922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 12013026 - 12013109
Alignment:
Q  111 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||  |||  | ||||| |||||| |||||||||| |||||||||    
T  12013026 aaaccgaaccaaataaggtcggatactttttcggttcggttcaatttaaattttcgatttcatcggttttattcaaaccactta 12013109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 27226938 - 27227089
Alignment:
Q  51 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 150  Q
    |||| ||||| || ||||| |||||||| || ||||||| |||| |||||| | || ||  | || ||||| ||||| | |||||  ||||  ||||| |    
T  27226938 aaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttcggctttgatccaaaccagacaagatgggataccttttaagtttgtt 27227037  T
Q  151 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||||||||| | |||||| |||||| | ||||| ||||| |||||||    
T  27227038 tcggtttggacttttgatttcatcggttttgtccgaacaacttacaccccta 27227089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 12471855 - 12471911
Alignment:
Q  138 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
    ||||| |||| |||||||||||| ||||  |||||| |||||||| |||||||||||    
T  12471855 ttttcagttttgttcggtttggattttcaatttcatcggttttatccgaaccactta 12471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 35738239 - 35738291
Alignment:
Q  138 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 190  Q
    ||||||||| |||||||||||||||||| ||||| | | |||||| |||||||    
T  35738239 ttttcggttcggttcggtttggactttccgtttcgtcgattttatccgaacca 35738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 46655701 - 46655514
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||| |||||||||||    
T  46655701 atcattggattggttcatcggtttcacggatctcgaaatgaaaaagcatgaaccaaaccaaactagattggttttgattggttcggatcggtttcaaacc 46655602  T
Q  116 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||  ||||| ||||||| |||| ||||||||| |||| ||| ||||| |||| |||| ||||| ||||||||||  |||||||    
T  46655601 gaaccaagtaaggtcggatattttttttggtttggtttggttcggattttcgatttcgttggatttatccgaaccacttgcaccccta 46655514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 44471168 - 44471020
Alignment:
Q  51 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 150  Q
    |||| ||||| || ||||| ||||||||||||||||||| |||| ||| || | |||||  |||||||| ||||||||| |||||  |||||||||||||    
T  44471168 aaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggt 44471069  T
Q  151 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 199  Q
    |||||||||| ||||| |||||| |||||| | ||||||||||| ||||    
T  44471068 tcggtttggattttcgatttcatcggttttgtccgaaccacttacaccc 44471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 11503337 - 11503513
Alignment:
Q  27 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 126  Q
    |||| |||||||||   |||||| |||| |||||||  |||||||||||||  ||||||||||||||| |||||| | |||||  ||||  |||| ||||    
T  11503337 ggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaa 11503436  T
Q  127 ggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 203  Q
    ||| |||||  |||| ||||||||||||||||||||||| ||||||| ||||||||   |||| |||| ||||||||    
T  11503437 ggtcggatacatttttggtttggttcggtttggactttcagtttcatcggttttatcttaaccgcttacacccctat 11503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 30554574 - 30554726
Alignment:
Q  51 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 150  Q
    |||| |||||||  ||||| ||||||||||||||||||| |||| |||||| | | |||  |||||||| ||||||||| ||||| ||||||||||| |     
T  30554574 aaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggatactttttcggtttagc 30554673  T
Q  151 tcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 203  Q
    ||| |||||| |||||||||||| | |||| ||||||||| ||| ||||||||    
T  30554674 tcgatttggattttcggtttcatcgattttgttcgaaccatttacacccctat 30554726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 46892701 - 46892612
Alignment:
Q  105 ggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||  ||||||| ||||||   |||||||||||    
T  46892701 ggttttaaaccgaaccaaacaaggtcggatattttttcggtttggttcggtttgaattttttgtttcatcggttttgcccgaaccactta 46892612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 27524154 - 27524053
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 164  Q
    ||||| |||||||| || ||| ||| |||| ||| || |||||||  | |||||||||||||||| | |||  ||||||||||||||  |||||||||||    
T  27524154 gaaccgaaccaaacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttttcggtttggtttagtttggacttt 27524055  T
Q  165 cg 166  Q
    ||    
T  27524054 cg 27524053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 779533 - 779629
Alignment:
Q  51 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggttt 147  Q
    |||| ||||| || ||||| ||||||||||||| ||||| | || |||||  |  ||||  |||||||| ||||||||||||||| |||||||||||    
T  779533 aaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 23307117 - 23307205
Alignment:
Q  106 gtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 194  Q
    |||| |||||||||||  |||||||| ||| | |||| |||||||| ||||| |||||||  |||||| | |||| |||||||||||||    
T  23307117 gttttaaaccgaaccattcaaggttgaatactatttcagtttggtttggtttagactttcaatttcatcgattttgttcgaaccactta 23307205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 12937849 - 12937912
Alignment:
Q  137 tttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 200  Q
    ||||||| ||| |||||||||||| |||||||||||| | |||||| |||| |||||| |||||    
T  12937849 tttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttacacccc 12937912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 26757751 - 26757593
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||| ||||  || ||||| |||||| ||| |||| ||| | || |||||| |  |||| ||||  |||||||||| || | ||| |||||||    
T  26757751 gatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatactttttcg 26757652  T
Q  144 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
     ||| ||| | |||||| ||||| ||||||||||||| | | ||||||||| |||||||    
T  26757651 attttgtttgatttggattttcgatttcattggttttgtccaaaccacttacaccccta 26757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 44285691 - 44285605
Alignment:
Q  71 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 157  Q
    |||||||||| |||| ||| | || |||||| | |||||  ||||||||||||||||||   |||||||||||||||  ||||||||    
T  44285691 aaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaaccaaacaaggtcatatattttttcggtttaattcggttt 44285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 23659501 - 23659401
Alignment:
Q  102 attggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccct 201  Q
    ||||||||  |||||||||||||||  || |||| ||||||| ||| |  ||||||| | |||||||||||| | |||| |  |||||||||| ||||||    
T  23659501 attggttttgaaccgaaccaaacaaaattagatactttttcgatttagaacggtttgaattttcggtttcatcgattttgtctgaaccacttatacccct 23659402  T
Q  202 a 202  Q
    |    
T  23659401 a 23659401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 31111592 - 31111413
Alignment:
Q  23 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 122  Q
    |||||||| ||||||||||  |||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||| |||  |||||||||||||||||    
T  31111592 gattggtttatcggtttcaaggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaa 31111493  T
Q  123 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    ||||||| ||||||||||||||||||||||  |||||| |||||||||| ||| |||| |   ||||||||| |||||||    
T  31111492 acaaggtcggatattttttcggtttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacaccccta 31111413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 4638340 - 4638207
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||| ||| || | |||| |||||||| | |||||||||    
T  4638340 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaacc 4638241  T
Q  116 gaaccaaacaaggttggatattttttcggtttgg 149  Q
    ||||| |||||||| |||||||||||||||||||    
T  4638240 gaaccgaacaaggtcggatattttttcggtttgg 4638207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 13852276 - 13852453
Alignment:
Q  23 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 122  Q
    |||||||||||||||||||| |||||| |||| |||||  ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||| |||    
T  13852276 gattggttcatcggtttcacggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaa 13852375  T
Q  123 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 200  Q
    |||| ||  |||||||||| | |||| |||  |||||||||||| |||| |||||||| | ||||| ||||| |||||    
T  13852376 acaaagtcagatatttttttgatttgattcaatttggactttcgatttcgttggttttgtccgaactacttacacccc 13852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 29109190 - 29109348
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||| ||||| |  ||||||||||||||||||| ||||| | ||  ||||| | |||||  ||| |||||||||||||| ||||| ||||||     
T  29109190 gatctcaaaattaaaaaccgagaaccaaaccaaactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttca 29109289  T
Q  144 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    ||||||||||||||||| |||| |||||||  ||||| | ||||||||||| |||||||    
T  29109290 gtttggttcggtttggattttcagtttcatcagttttgtccgaaccacttacaccccta 29109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 3919857 - 3920029
Alignment:
Q  18 catcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccga 117  Q
    |||||| | ||||||||||||    ||||||| |||| |||||| | ||||||||||||||||||||||||| | || |||||| | |||||  |||| |    
T  3919857 catcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcggttttgaaccaa 3919956  T
Q  118 accaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 190  Q
    ||||||||| || | ||  |||||||||||| ||| ||||| | ||| ||||||||||||||| ||| |||||    
T  3919957 accaaacaaagtcgaatgctttttcggtttgattcagtttgaattttaggtttcattggttttgttccaacca 3920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 36009345 - 36009278
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagat 83  Q
    |||||||||||| |||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||    
T  36009345 atcatcggattgattcatcggtttcatggatctcgaaatgaaaaaccatgaaccaaaccaaactagat 36009278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 12893980 - 12894099
Alignment:
Q  83 tcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttat 182  Q
    ||||||| |||| |||||| || ||||  |||||||||||||||||| |||||  |||| |||||||||| ||||||||||| | |||| |||||||| |    
T  12893980 tcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttggttcagtttggacttttgatttcgttggttttgt 12894079  T
Q  183 tcgaaccacttaaaccccta 202  Q
      |||||||| | |||||||    
T  12894080 ctgaaccactcacaccccta 12894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 37630461 - 37630375
Alignment:
Q  71 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 157  Q
    |||||||||||||| |||| | || ||| |||| | |||  |||| |||||| ||||||| |||| |||||||||||||||||||||    
T  37630461 aaccaaactagatcagtttaggttggtttggatcgattttgaaccaaaccaagcaaggttcgatactttttcggtttggttcggttt 37630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 38607141 - 38607020
Alignment:
Q  27 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 126  Q
    ||||||||||||| |  |||||| |||| ||||| || ||||| |||||||| || || |||| |||| |||||| | |||||  || |||| |||||||    
T  38607141 ggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcgaa-caaacaa 38607043  T
Q  127 ggttggatattttttcggtttgg 149  Q
    ||| |||||| ||||||||||||    
T  38607042 ggtcggatatattttcggtttgg 38607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 5526353 - 5526225
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 164  Q
    ||||| ||||||||||||||||||| | || |||||  |  ||||  |||||||| ||||||||| |||||  ||||||||||||||   |||||| |||    
T  5526353 gaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggatttt 5526255  T
Q  165 cggtttcattggttttattcgaaccactta 194  Q
    || |||| |||||||| | || ||||||||    
T  5526254 cgatttctttggttttgtccggaccactta 5526225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 30906942 - 30907029
Alignment:
Q  116 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 203  Q
    |||||||||||||| | | | ||||| |||||||||| || |||| |||||||||||| | |||| | | ||||||||| ||||||||    
T  30906942 gaaccaaacaaggtcgaaaacttttttggtttggttcagtctggattttcggtttcatcgattttgtccaaaccacttacacccctat 30907029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 1844 - 1970
Alignment:
Q  16 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 115  Q
    |||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||| |||||| |||| |||| |||| ||| | |||||||||    
T  1844 atcatcggattggttcatcggtttcacgaatctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaacc 1943  T
Q  116 gaaccaaacaaggttggatattttttc 142  Q
    |||||||||||||| ||||||||||||    
T  1944 gaaccaaacaaggtcggatattttttc 1970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 7176529 - 7176662
Alignment:
Q  66 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 165  Q
    |||| ||||||||||||||||||| | || |||||| | | |||  |||| ||||||||||||||||||| |||||||| ||||||||||| |   ||||    
T  7176529 aaccgaaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttc 7176628  T
Q  166 ggtttcattggttttattcgaaccacttaaaccc 199  Q
    |||||||| |||||| | |||| |||||| ||||    
T  7176629 ggtttcatcggttttgtccgaaacacttacaccc 7176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 23301548 - 23301441
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 164  Q
    ||||| |||||||||||||| |||| | || |||||| | |||||  |||||||||||||||||| | ||  |||||||||||||||| ||||| | |||    
T  23301548 gaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttttcggtttggttcagtttgaatttt 23301449  T
Q  165 cggtttca 172  Q
    ||||||||    
T  23301448 cggtttca 23301441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 11971546 - 11971456
Alignment:
Q  112 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||||||||||||||| | |||||  |||||||||| ||||||||| |  ||||| |||||||||||||||   ||||||||| |||||||    
T  11971546 aaccgaaccaaacaagatcggatacattttcggtttagttcggtttaggttttcgatttcattggttttatctaaaccacttacaccccta 11971456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 23300583 - 23300455
Alignment:
Q  44 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 143  Q
    |||||| |||| ||||| |  ||||| ||| |||||||||| |||| | || |||||| |  ||||  |||||||||||||||||| |  |  |||||||    
T  23300583 gatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttttcg 23300484  T
Q  144 gtttggttcggtttggactttcggtttca 172  Q
    ||||||||||||||| | |||||||||||    
T  23300483 gtttggttcggtttgaattttcggtttca 23300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 7551423 - 7551525
Alignment:
Q  45 atctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcgg 144  Q
    |||||||||| |||||||| ||||| | |||||| |   |||||| |||| |||||| |||||||  | ||||||||||||| ||||||||  |||||||    
T  7551423 atctcgaaatgaaaaatcaagaaccgacccaaacaaagccggtttagattggttcggtttggttttgatccgaaccaaacaatgttggataccttttcgg 7551522  T
Q  145 ttt 147  Q
    |||    
T  7551523 ttt 7551525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 9826868 - 9826747
Alignment:
Q  71 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa-ggttggatattttttcggtttggttcggtttggactttcggtt 169  Q
    |||||||||||||||||||   || |||||| | |||||  |||||||||||| || ||| ||||| |||| ||||||||||| ||||| | ||| ||||    
T  9826868 aaccaaactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatactttt-cggtttggttcagtttgaatttttggtt 9826770  T
Q  170 tcattggttttattcgaaccact 192  Q
    || | |||||| | |||||||||    
T  9826769 tcttcggttttctccgaaccact 9826747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 23585990 - 23585913
Alignment:
Q  65 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttc 142  Q
    |||||||||||||||| ||||||||   |||||| || | |||||  |||||||| ||||||||| ||||| ||||||    
T  23585990 gaaccaaaccaaactatatcggtttacgttagtttggttcggttttgaaccgaacaaaacaaggtcggatactttttc 23585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 33819 - 33729
Alignment:
Q  112 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 202  Q
    |||| ||||| |||||||  ||||  |||||||||||||||  ||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  33819 aaccaaaccagacaaggtcagatacattttcggtttggttcaatttggactttcagtttcattggttttatccgaaccacttacaccccta 33729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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