View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_416 (Length: 234)
Name: NF11982A_low_416
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_416 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 7001563 - 7001367
Alignment:
| Q |
19 |
atgtatactccctcccactcaagttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7001563 |
atgtatactccctcccactcaagttttgagctattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttcc |
7001464 |
T |
|
| Q |
119 |
ataaagtgtgacagtgttgaatttgccaaaaacattggatcaaaatgcaacaaagcttgctaagggtaaattcatgtaaaaatttattatgcatact |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7001463 |
ataaagtatgacagtgttgaatttgccaaaaacattggatcaaaatgcaacaaagcttgctaagggtaaattcatgtaaaaattgattacgcatact |
7001367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 10792877 - 10792924
Alignment:
| Q |
33 |
ccactcaagttttgagatattagaggtgctggaggagcaagttttgga |
80 |
Q |
| |
|
||||||| |||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
10792877 |
ccactcatgttttgagctattagaggaggtggaggagcaagttttgga |
10792924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 38061876 - 38061749
Alignment:
| Q |
50 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaatttgccaaaa |
149 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||||||| ||||||| ||| |||||||| |
|
|
| T |
38061876 |
tattagaggaggtggaggagcaagttttggagtcataatttcatggaaggttaaacttgttcaagttccatcaagtgtgtcagtgttcaatgtgccaaaa |
38061777 |
T |
|
| Q |
150 |
acattggatcaaaatgcaacaaagcttg |
177 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38061776 |
acattggatcaaaatgcaacaaagcttg |
38061749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 38058569 - 38058704
Alignment:
| Q |
41 |
gttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaat |
140 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || ||||||||| || ||| |
|
|
| T |
38058569 |
gttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaaacttgttcaagttccatcaattgtgacagtcttcaat |
38058668 |
T |
|
| Q |
141 |
ttgccaaaaacattggatcaaaatgcaacaaagctt |
176 |
Q |
| |
|
| |||||||||||||| || ||||||||||||||| |
|
|
| T |
38058669 |
gttccaaaaacattggaacacaatgcaacaaagctt |
38058704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 38086416 - 38086543
Alignment:
| Q |
50 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaatttgccaaaa |
149 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||| || |||||||||||| | | | |||||| |
|
|
| T |
38086416 |
tattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactgttccaaaa |
38086515 |
T |
|
| Q |
150 |
acattggatcaaaatgcaacaaagcttg |
177 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
38086516 |
acattggaacaaaatgcaacaaagcttg |
38086543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 38072897 - 38073033
Alignment:
| Q |
41 |
gttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaat |
140 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||| || ||| || ||||| | | |
|
|
| T |
38072897 |
gttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcaagttccatcaactgtaacggtgtttact |
38072996 |
T |
|
| Q |
141 |
ttgccaaaaacattggatcaaaatgcaacaaagcttg |
177 |
Q |
| |
|
| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
38072997 |
gttccaagaacattggaacaaaatgcaacaaagcttg |
38073033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 38081991 - 38082118
Alignment:
| Q |
50 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaatttgccaaaa |
149 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| || ||||| ||||| | | |||| | |
|
|
| T |
38081991 |
tattagaggtggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacagttccaaga |
38082090 |
T |
|
| Q |
150 |
acattggatcaaaatgcaacaaagcttg |
177 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
38082091 |
gcattggaacaaaatgcaacaaagcttg |
38082118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 34268758 - 34268711
Alignment:
| Q |
33 |
ccactcaagttttgagatattagaggtgctggaggagcaagttttgga |
80 |
Q |
| |
|
||||||| |||||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
34268758 |
ccactcatgttttgagctattagaggaggtggaggagcaagttttgga |
34268711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University