View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_42 (Length: 413)
Name: NF11982A_low_42
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 46588971 - 46588665
Alignment:
| Q |
18 |
aacctgtggcacatgggttcaatctgaataaatcttgacccaatatgaattaacttttaatagctgaaatatgaattcttgacccctattgaggtttaaa |
117 |
Q |
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| T |
46588971 |
aacctttggcacatgggttcaatctggataaatcttgacccaatatgaattaacttttaatagctgaaatatgaattcttgacccctattgaggtttaaa |
46588872 |
T |
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| Q |
118 |
ttagaataaatgtatatattttttaactcttaagttttgggagaaatgagccattataactcaaagtttagcaggaagacctcactaaaaaattgttaca |
217 |
Q |
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| T |
46588871 |
ttagaataaatgtatatattttttaactcttaagttttgggagaaatgagccattataactcaaagtttagcaggaagacctcactaaaaagttgttaca |
46588772 |
T |
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| Q |
218 |
aaaccatgtttgaatttgagttctctaattattcttcctttactagaacttgttaaccacttgaggaataaattttagaatttaaacttattacctactt |
317 |
Q |
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| T |
46588771 |
aaaccatgtttgaatttgagttctctaattattcttcctttactagaacttgtttaccacttgaggaataaattttagaatttaaacttattacctactt |
46588672 |
T |
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| Q |
318 |
gaaaagt |
324 |
Q |
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| T |
46588671 |
gaaaagt |
46588665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 46588665 - 46588627
Alignment:
| Q |
354 |
ttttgttttggtttatatccaacacaacaatatgtcaat |
392 |
Q |
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| T |
46588665 |
ttttgttttggtttatatccaacacaacaatatgtcaat |
46588627 |
T |
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