View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_425 (Length: 232)
Name: NF11982A_low_425
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_425 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 28519269 - 28519115
Alignment:
| Q |
14 |
aacctgtgtccaaaagagcaacaactatgtcgcgttctaatttcaatcctctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtg |
113 |
Q |
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| T |
28519269 |
aacctgtgtccaaaagagcaacaactatgtcgcgttctaatttcaatcttctcttggcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtg |
28519170 |
T |
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| Q |
114 |
tagcttacggtattgatttttaaacaccaaaagtacttcatccatggctacacat |
168 |
Q |
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| T |
28519169 |
taacttacggtattgatttttaaacaccaaaagtacttcatccatggctacacat |
28519115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 28519089 - 28519051
Alignment:
| Q |
194 |
caatatctacaaattttaagctagagaaaaaattataca |
232 |
Q |
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| T |
28519089 |
caatatctacaaattttaagctagagaaaaaattataca |
28519051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 12728764 - 12728832
Alignment:
| Q |
63 |
tctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggtattgatt |
131 |
Q |
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| T |
12728764 |
tctcttagctgtcaatggtaatccaataaagtcccatgatcttgttgtgtgtagcttgcggtattgatt |
12728832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 34291424 - 34291362
Alignment:
| Q |
63 |
tctcttagcagtcagaggtaaaccaatgaagttccatgatcttgttgtgtgtagcttacggta |
125 |
Q |
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| T |
34291424 |
tctcttagctgtcaaaggtaatccaataaaatcccatgatcttgttgtgtgtagcttgcggta |
34291362 |
T |
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