View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_448 (Length: 230)

Name: NF11982A_low_448
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_448
NF11982A_low_448
[»] chr7 (11 HSPs)
chr7 (1-225)||(35938762-35938986)
chr7 (1-185)||(35981485-35981669)
chr7 (1-185)||(36002897-36003081)
chr7 (1-188)||(36222014-36222201)
chr7 (3-188)||(32727039-32727224)
chr7 (8-194)||(36218030-36218216)
chr7 (7-188)||(35957461-35957642)
chr7 (3-188)||(35976916-35977101)
chr7 (3-188)||(35998328-35998513)
chr7 (3-183)||(35946258-35946438)
chr7 (5-143)||(35951937-35952075)
[»] chr1 (2 HSPs)
chr1 (3-164)||(18117552-18117713)
chr1 (3-186)||(18125183-18125366)
[»] chr2 (1 HSPs)
chr2 (1-188)||(26329056-26329243)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35938986 - 35938762
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  35938986 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttgtaagagattctgagatatggaatttagaacagaagcaaaatgata 35938887  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagattacaccttccgcac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35938886 ttttacctgcactaaaattaagctatgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatatcccaaagattacaccttccgcga 35938787  T
Q  201 ttatagatgcagtattgctaaactt 225  Q
    |||||||||||||||||||||||||    
T  35938786 ttatagatgcagtattgctaaactt 35938762  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 35981669 - 35981485
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||| |||| |||| ||||||||| |||||||| |||| |||| | || ||||||    
T  35981669 aaaacattaggaagttccctgttttcaaagcttgatttaaataagtgggtatttgtaagggattctgagttatggaatctagagcagaagaaagatgata 35981570  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaaga 185  Q
    |||||||||| || || ||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  35981569 ttttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 35981485  T

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Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 36003081 - 36002897
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||| |||| |||| ||||||||| |||||||| |||| |||| | || ||||||    
T  36003081 aaaacattaggaagttccctgttttcaaagcttgatttaaataagtgggtatttgtaagggattctgagttatggaatctagagcagaagaaagatgata 36002982  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaaga 185  Q
    |||||||||| || || ||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  36002981 ttttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 36002897  T

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Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 36222014 - 36222201
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  |||  |||||||   |||||| ||||| |||||||| | | ||  |||||    
T  36222014 aaaacattaggaagttctctgttatcaaaatttgatttaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgata 36222113  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 188  Q
    ||||||||||| ||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||| | ||||||||||||||    
T  36222114 ttttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagatta 36222201  T

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Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 32727224 - 32727039
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    ||||||| |||||||  | || ||||||| ||||||||||||||||  |||| | ||||||||||||||||||||||||||||||| | || ||||||||    
T  32727224 aacattacgaagttccttattctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatatt 32727125  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 188  Q
    ||||||||| | || ||||||||||||||||| |||||||| |||||||| ||||||||||  |||||||| ||||||||||||||    
T  32727124 ttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagatta 32727039  T

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Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 36218030 - 36218216
Alignment:
Q  8 taggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatattttacc 107  Q
    |||||||||||||||| ||||||||||||||| ||||||||  |||| |||||||   ||||||||||||||||||||||| | || |||||||||||||    
T  36218030 taggaagttctctgttctcaaaatttgatttagataagtggttatttgtaagagaccatgagatatggaatttagaacagaagaaagatgatattttacc 36218129  T
Q  108 tgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagattacacctt 194  Q
    |||  |||||||||||||||||||||| ||||| ||  |||| || |||||||||| ||||||| | ||||||||||| || |||||    
T  36218130 tgctttaaaattaagctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttccttgtatcccaaagactatacctt 36218216  T

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Target: chr7; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 35957642 - 35957461
Alignment:
Q  7 ttaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatattttac 106  Q
    |||| ||||||||| || ||||| |||||| ||| ||||||||||||| | || || |||||||| |||||||||||||| | |   |||||||||||||    
T  35957642 ttagcaagttctctcttctcaaactttgatataagtaagtgggaatttgttagggactctgagatgtggaatttagaacaaaagattaatgatattttac 35957543  T
Q  107 ctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 188  Q
    |||| ||||||||||| ||||||||||| ||||| ||  |||| || |||||||||||||||||||| ||||||||||||||    
T  35957542 ctgcgctaaaattaagttatgatcaaatgccatcatatctgagacaatgttttgcttatttttccctttatcccaaagatta 35957461  T

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Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 35977101 - 35976916
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    |||||||||||||||||| || ||||| |||||| |||  |||||||||||  | || || |||||||| |||||||||||||| | | || ||| ||||    
T  35977101 aacattaggaagttctctcttctcaaactttgatataagcaagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatggtatt 35977002  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 188  Q
    |||||||| ||||||||||||||||||||||| ||||| ||  |||| || ||||||| |||| ||||||| ||||||||||||||    
T  35977001 ttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaagatta 35976916  T

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Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 35998513 - 35998328
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    |||||||||||||||||| || ||||| |||||| |||  |||||||||||  | || || |||||||| |||||||||||||| | | || ||| ||||    
T  35998513 aacattaggaagttctctcttctcaaactttgatataagcaagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatggtatt 35998414  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 188  Q
    |||||||| ||||||||||||||||||||||| ||||| ||  |||| || ||||||| |||| ||||||| ||||||||||||||    
T  35998413 ttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaagatta 35998328  T

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Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 35946438 - 35946258
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    |||||||| ||||||||| || ||||| |||||| ||| ||||||||||||  | || || |||||||| |||||||||||||| | | || |||||||     
T  35946438 aacattagcaagttctctcttctcaaactttgatataagtaagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatgatatc 35946339  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaa 183  Q
    |||||||| ||||||||||| ||||||||||| ||||| ||  | || || ||||||||||||||||| || | |||||||    
T  35946338 ttacctgcgctaaaattaagttatgatcaaatgccatcatatctaagacaatgttttgcttatttttctctttttcccaaa 35946258  T

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Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 35952075 - 35951937
Alignment:
Q  5 cattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatttt 104  Q
    |||| |||||||| || || ||||| || ||||||| ||||||||||||| | ||||| ||||  || ||||||||||||||   | || ||||||||||    
T  35952075 cattgggaagttccctcttctcaaacttcgatttaagtaagtgggaatttgtcagagactctgctatttggaatttagaacaacagaaagatgatatttt 35951976  T
Q  105 acctgcactaaaattaagctatgatcaaataccatccta 143  Q
    |||||| || ||||||||||||||||||||  |||||||    
T  35951975 acctgccctgaaattaagctatgatcaaatgtcatccta 35951937  T

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Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 18117713 - 18117552
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||| ||  |||||| |||||||| |||| ||||||||| | |||||||||||||    
T  18117713 aacattaggaagctgtctgttttcaaaatttgatttaaataaatgggaacttgcaagagactctgagatgtggactttagaacaaaagcaaaatgatatt 18117614  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgctta 164  Q
    ||||||||||||||||||||||||||| |||| |||||||| || |||||||| ||||||||    
T  18117613 ttacctgcactaaaattaagctatgataaaatgccatcctatttaaggcactgctttgctta 18117552  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 18125366 - 18125183
Alignment:
Q  3 aacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgatatt 102  Q
    ||||||||||||||| || || |||||||||||||||||||  |||  |||| |||||||||||||| | ||||||||| |||||    || ||||||||    
T  18125366 aacattaggaagttccctattctcaaaatttgatttaaatacatggatatttgtaagagattctgagctgtggaatttaaaacagcaaaaagatgatatt 18125267  T
Q  103 ttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagat 186  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || ||||| || ||||||||||| ||||| ||||| ||||||    
T  18125266 ttacctgcactaaaattgagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcctaaagat 18125183  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 26329056 - 26329243
Alignment:
Q  1 aaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatgata 100  Q
    ||||| ||||||||||| || || ||||||||||||||| |||||||| | ||  | || || ||  | ||||||||||||   || |   || ||||||    
T  26329056 aaaacgttaggaagttcactcttctcaaaatttgatttagataagtggaagttcgtcagggactcccaaatatggaatttaaggcaaaacaaagatgata 26329155  T
Q  101 ttttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 188  Q
    |||||||||  || || ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| | ||||||||||||    
T  26329156 ttttacctgtgcttaagttaagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaagatta 26329243  T

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