View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_450 (Length: 230)
Name: NF11982A_low_450
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_450 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 20816612 - 20816837
Alignment:
| Q |
1 |
gcgtgctggaagaacccaaccagggaaatgctttagactttatacgggaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgaga |
100 |
Q |
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| T |
20816612 |
gcgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgaga |
20816711 |
T |
|
| Q |
101 |
tctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttggctttatggaccctcctgcaccagaaaccttaatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20816712 |
tctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgc |
20816811 |
T |
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| Q |
201 |
gcgctttggaagtgttgaattacttg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
20816812 |
gcgctttggaagtgttgaattacttg |
20816837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 38779532 - 38779308
Alignment:
| Q |
2 |
cgtgctggaagaacccaaccagggaaatgctttagactttatacgggaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagat |
101 |
Q |
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|||||||||||||| || || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779532 |
cgtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagat |
38779433 |
T |
|
| Q |
102 |
ctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttggctttatggaccctcctgcaccagaaaccttaatgcg |
201 |
Q |
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| T |
38779432 |
ctaatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcg |
38779333 |
T |
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| Q |
202 |
cgctttggaagtgttgaattacttg |
226 |
Q |
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| T |
38779332 |
tgctttggaagtgttgaattacttg |
38779308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 33388491 - 33388268
Alignment:
| Q |
2 |
cgtgctggaagaacccaaccagggaaatgctttagactttatacgggaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagat |
101 |
Q |
| |
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||||| |||||||| ||||| |||||||||| |||||| ||||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388491 |
cgtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagat |
33388392 |
T |
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| Q |
102 |
ctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttggctttatggaccctcctgcaccagaaaccttaatgcg |
201 |
Q |
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||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||| || |||||||||||||| |
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| T |
33388391 |
ctaatcttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcg |
33388292 |
T |
|
| Q |
202 |
cgctttggaagtgttgaattactt |
225 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
33388291 |
tgctttggaagtgttgaattactt |
33388268 |
T |
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