View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_46 (Length: 409)
Name: NF11982A_low_46
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_46 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 87 - 409
Target Start/End: Original strand, 45642707 - 45643029
Alignment:
| Q |
87 |
cattgcaagatttcctagattgatgattaatactacaacctccataagtctgaatagatcatacaagaattcaaattaaattaatagataatgacacgga |
186 |
Q |
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| T |
45642707 |
cattgcaagatttcctagattgatgattaatactacaacctccataagtctgaatagatcatacaagaatttaaattaaattaatagataatgacacgga |
45642806 |
T |
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| Q |
187 |
agaggaaaataaacgaagcaccgcctctcataaaattatctcatcacactaatatatgacggatcaagatccaggaaacagtgaaaaagaaagcaacagt |
286 |
Q |
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| T |
45642807 |
agaggaaaataaacgaagcaccgcctctcataaaattatctcatcacactaatatatgatggatcaagatccaggaaacagtgaaaaagaaagcaacagt |
45642906 |
T |
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| Q |
287 |
tggtgagatggtagtagctgaagatgcactttgtgtggtaggagtagtggtggtggttgttgcggcaggggtgcggttgggagggggaactttccctggt |
386 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||| | | ||||||||| | |
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| T |
45642907 |
tggtgagatggtagtagctgaagatgcactttgtatggtaggagtagtggtggtggttgttgcggcaggggtgcgatcggaaggtgaacctttccctgat |
45643006 |
T |
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| Q |
387 |
ggtaatggggttggaggaggagc |
409 |
Q |
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|||||||| |||| || |||||| |
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| T |
45643007 |
ggtaatggtgttgcagaaggagc |
45643029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 230 - 345
Target Start/End: Original strand, 45650108 - 45650223
Alignment:
| Q |
230 |
tcacactaatatatgacggatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtgtggtagga |
329 |
Q |
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| T |
45650108 |
tcacaccagtatataactgatcaagatccatgaaacagtgaaaaataaagcaacaattggtgagatactagtagatgaagatgcactttgtgtggaagga |
45650207 |
T |
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| Q |
330 |
gtagtggtggtggttg |
345 |
Q |
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| T |
45650208 |
gtagtggtggtggttg |
45650223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 248 - 359
Target Start/End: Complemental strand, 45703573 - 45703465
Alignment:
| Q |
248 |
gatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtgtggtaggagtagtggtggtggttgtt |
347 |
Q |
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| T |
45703573 |
gatcaagatccatgaaacaataaaaaagaaggcaacaattggtgagatacaagtagctgaagatgcactttgcatggtagg---agtggtggtggttgtt |
45703477 |
T |
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| Q |
348 |
gcggcaggggtg |
359 |
Q |
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| T |
45703476 |
gcggcgggggtg |
45703465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 248 - 359
Target Start/End: Complemental strand, 45887379 - 45887271
Alignment:
| Q |
248 |
gatcaagatccaggaaacagtgaaaaagaaagcaacagttggtgagatggtagtagctgaagatgcactttgtgtggtaggagtagtggtggtggttgtt |
347 |
Q |
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| T |
45887379 |
gatcaagatccatgaaacaataaaaaagaaggcaacaattggtgagatacaagtagctgaagatgcactttgcatggtagg---agtggtggtggttgtt |
45887283 |
T |
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| Q |
348 |
gcggcaggggtg |
359 |
Q |
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| T |
45887282 |
gcggcgggggtg |
45887271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 45642650 - 45642686
Alignment:
| Q |
31 |
gactcagtaaccaatgatcattcagtatattaagcac |
67 |
Q |
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| T |
45642650 |
gactcagtaaccaatgatcattcagtatattaagcac |
45642686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 1193689 - 1193589
Alignment:
| Q |
248 |
gatcaagatccaggaaacagtgaaaaagaaag---caacagttggtgagatggtagtagctgaagatgcactttgtgtggtaggagtagtggtggtggtt |
344 |
Q |
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|||||||||||| |||||| ||||||| |||| ||||| ||||| ||| |||||||||||||||||||||| || ||||||||||||||||| ||| |
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| T |
1193689 |
gatcaagatccatgaaacaatgaaaaataaagaagcaacaattggttagagcctagtagctgaagatgcactttgcgtagtaggagtagtggtggtagtt |
1193590 |
T |
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| Q |
345 |
g |
345 |
Q |
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| T |
1193589 |
g |
1193589 |
T |
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