View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_464 (Length: 229)
Name: NF11982A_low_464
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_464 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52033779 - 52033557
Alignment:
| Q |
1 |
gaaaagaagatactcatattaatgtgaccttgattattatatgcatccatatctatctcaaacttgttgttcacaatagctgtcacattgtatctcacac |
100 |
Q |
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| T |
52033779 |
gaaaagaagatactcatattaatgtgaccttgattattatatgcatccatatctatctcaaacttgttgttcacaatagctgtcacattgtatctcacac |
52033680 |
T |
|
| Q |
101 |
cttgagcagtgaatagttcattagagtatatggggaagtttttggcattatagagattaaatccccaataagccgttggaataagaatgtagattaataa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033679 |
cttgagcactgaatagttcattagagtatatggggaagtttttggcattatagagattaaatccccaataagccgttggaataagaatgtagattaataa |
52033580 |
T |
|
| Q |
201 |
aatgtagccaacaaggatgttaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
52033579 |
aatgtagccaacaaggatgttaa |
52033557 |
T |
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