View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_465 (Length: 229)

Name: NF11982A_low_465
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_465
NF11982A_low_465
[»] chr7 (14 HSPs)
chr7 (1-223)||(24122006-24122228)
chr7 (8-205)||(24132455-24132652)
chr7 (8-197)||(24232527-24232716)
chr7 (25-203)||(24238085-24238263)
chr7 (8-204)||(24138389-24138585)
chr7 (40-223)||(24151095-24151278)
chr7 (28-207)||(24154266-24154445)
chr7 (1-143)||(24284011-24284153)
chr7 (7-102)||(21194283-21194378)
chr7 (7-218)||(24161168-24161379)
chr7 (24-209)||(24146118-24146303)
chr7 (13-209)||(3494819-3495015)
chr7 (35-140)||(21199524-21199629)
chr7 (8-116)||(23342851-23342959)
[»] chr2 (2 HSPs)
chr2 (35-218)||(28160509-28160692)
chr2 (9-192)||(10988818-10989001)
[»] chr1 (2 HSPs)
chr1 (7-190)||(15380177-15380360)
chr1 (7-209)||(3151062-3151263)
[»] chr3 (1 HSPs)
chr3 (76-116)||(1157403-1157443)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24122228 - 24122006
Alignment:
Q  1 agagtcatggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24122228 agagtcatggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccattaggta 24122129  T
Q  101 ctatttcaagacttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24122128 ctatttcaagacttgtggctaaggagtcagatattgaagcagtgagatttggcagcctgagtacactttatcaaagtgtatcagatcttgatgaacacta 24122029  T
Q  201 tctatggtccaatacctgtaaag 223  Q
    |||||||||||||||||| ||||    
T  24122028 tctatggtccaatacctgcaaag 24122006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 24132652 - 24132455
Alignment:
Q  8 tggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttc 107  Q
    ||||||||||| |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |    
T  24132652 tggtggacaaacaaaagagcaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaacattgcctttaggtactattgc 24132553  T
Q  108 aagacttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatctat 205  Q
    |||||||||||| ||||||||||||||||||||||||| || ||| ||| | | | |||| |||||||||||  ||||||||||| |||| |||||||    
T  24132552 aagacttgtggcaaaggagtcagatattgaagcagtgatatttggcagcattaattcactgtatcaaagtgtgacagatcttgatcaacaatatctat 24132455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 24232716 - 24232527
Alignment:
Q  8 tggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttc 107  Q
    |||||||||||||||  |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||| || || ||||| |||||| |    
T  24232716 tggtggacaaagaaaagaacaaagttgtgtatgctgaggctgggaaggatttcgttgatgctctcttcagcttcttaacattgcctttagggactattgc 24232617  T
Q  108 aagacttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaaca 197  Q
    |||| ||||||||||||| ||| ||||||||||||||| || ||| ||| | ||  || | ||||||||||| ||| |||||||| ||||    
T  24232616 aagatttgtggctaaggactcaaatattgaagcagtgaaatttggcagcattagctcattgtatcaaagtgtgtcaaatcttgatcaaca 24232527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 24238085 - 24238263
Alignment:
Q  25 aacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttcaagacttgtggctaagg 124  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||| || || ||||| |||||| ||||||||| |||||||     
T  24238085 aacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttaggaactattgcaagacttgcggctaagc 24238184  T
Q  125 agtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatct 203  Q
    ||||  |||| | ||| || | |  ||| ||||||||| ||||  ||||||||||| |||||||||||||||| |||||    
T  24238185 agtcgaatatcggagctgtaacagttggaagcctgagttcactgcatcaaagtgtagcagatcttgatgaacaatatct 24238263  T

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Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 24138585 - 24138389
Alignment:
Q  8 tggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttc 107  Q
    |||||||||| || | |||||||||| ||| | |||| ||||  |||||||||||||||| |||||| || |||||||| ||||| |||||||||||  |    
T  24138585 tggtggacaaggagaaaaacaaagttctgtttactgaggcagataaggattttgttgatgttcttttgagtttcttaacattacccttaggtactatcgc 24138486  T
Q  108 aagacttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatcta 204  Q
    | || | |||| ||| |||||| |||||||||||||||||| ||| ||| | ||| |||| ||||||||||| |||| ||||||| |||| ||||||    
T  24138485 aggaatcgtggataaagagtcaaatattgaagcagtgagatttggcagcataagttcactctatcaaagtgtgtcagttcttgatcaacaatatcta 24138389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 24151278 - 24151095
Alignment:
Q  40 gctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttcaagacttgtggctaaggagtcagatattgaag 139  Q
    ||||| || |||||||||||||||||||| || |||||||||||||| || || |||||||||||| | ||||| |||||| | |||||| |||| ||||    
T  24151278 gctgaggctgggaaggattttgttgatgcactcttcagcttcttaacatttcctttaggtactattgctagactcgtggctgaagagtcaaatatcgaag 24151179  T
Q  140 cagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatctatggtccaatacctgtaaag 223  Q
    |||||| || ||||||  ||||| |||| |||||||||||   ||||||||||  ||| |||||||||||  ||||||| ||||    
T  24151178 cagtgaaatttggtagtttgagttcactatatcaaagtgtgaaagatcttgatccacaatatctatggtcacatacctgcaaag 24151095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 24154445 - 24154266
Alignment:
Q  28 aaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttcaagacttgtggctaaggagt 127  Q
    |||||||| ||||||||||||| ||||||||| ||||||| ||| || ||||||||||| || || |||||||||||| ||||||||||  |||| ||||    
T  24154445 aaagttgtttatgctgaagcagagaaggatttcgttgatgttctgttaagcttcttaacattgcctttaggtactattgcaagacttgtatctaaagagt 24154346  T
Q  128 cagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatctatgg 207  Q
    |  ||||||||||||| | || |  |||| | ||| |||| ||||||||||| ||||||||| | ||| | |||||||||    
T  24154345 cgaatattgaagcagttaaatttaatagcattagttcactgtatcaaagtgtttcagatcttaaagaagaatatctatgg 24154266  T

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Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 24284011 - 24284153
Alignment:
Q  1 agagtcatggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggta 100  Q
    ||||| |||||||| |||||||  ||||||||| | ||| ||||||||| |||||||||||||||||  || ||||||||||| ||||| || ||||| |    
T  24284011 agagttatggtggataaagaaagtaacaaagttctatatcctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttaggga 24284110  T
Q  101 ctatttcaagacttgtggctaaggagtcagatattgaagcagt 143  Q
    ||||| ||||||| || ||||  || ||| |||||||||||||    
T  24284111 ctattgcaagactcgttgctacagactcaaatattgaagcagt 24284153  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 21194283 - 21194378
Alignment:
Q  7 atggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtact 102  Q
    ||||||||||||||||  ||||||||| |||||||||| ||||||||||||||| |||| | ||| |||||||||||||| || || |||||||||    
T  21194283 atggtggacaaagaaaggaacaaagttttgtatgctgaggcagggaaggattttattgaagttctattcagcttcttaacattgcctttaggtact 21194378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 24161379 - 24161168
Alignment:
Q  7 atggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactattt 106  Q
    ||||||||||||||||  || |||||| | |||||||| || || ||||||||||| |||| ||||||||||||||| || |||||  |||| ||||||     
T  24161379 atggtggacaaagaaaggaagaaagttctatatgctgaggctggaaaggattttgtcgatgttcttttcagcttcttgacattacctctagggactattg 24161280  T
Q  107 caagacttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatctatg 206  Q
    |  ||||  |  |||| |||||| |||| ||||||||||| | ||| ||| | ||| |||| || | |||||| |||||||| |||| ||| ||||| ||    
T  24161279 cttgactcatatctaaagagtcaaatatggaagcagtgaggtttggcagcattagttcactgtacctaagtgtgtcagatctcgatgcacagtatctctg 24161180  T
Q  207 gtccaatacctg 218  Q
    ||| ||||||||    
T  24161179 gtcaaatacctg 24161168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 24146303 - 24146118
Alignment:
Q  24 aaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttcaagacttgtggctaag 123  Q
    |||||||||| ||| ||| || ||||| |||||||||||||||| |||||| ||||||||| | || || ||||| || ||| ||| ||| ||||| |||    
T  24146303 aaacaaagttctgtttgcagaggcaggaaaggattttgttgatgttcttttgagcttcttatcattgcctttagggaccattgcaaaactcgtggcaaag 24146204  T
Q  124 gagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatctatggtc 209  Q
    || ||| |||||||| |||||| || ||| ||| | ||  || | ||||||||||| ||||||||||||  ||| ||||| |||||    
T  24146203 gactcaaatattgaatcagtgaaatttggcagcattagctcattgtatcaaagtgtgtcagatcttgatacacaatatctttggtc 24146118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 3495015 - 3494819
Alignment:
Q  13 gacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttcaagac 112  Q
    |||||||||| ||| | |||| ||||||||||||| || |||||||| || |||| ||| || || |||||||| || ||  ||||||||||| |||||     
T  3495015 gacaaagaaagaaatagagttctgtatgctgaagccggtaaggatttcgtcgatgttctctttagtttcttaacattgcctctaggtactattgcaagat 3494916  T
Q  113 ttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatctatggtc 209  Q
    | ||  ||||||| ||| ||||||||||||||| || ||||||| | ||  |||| ||||||||||| ||| |  ||||  |||| |||||||||||    
T  3494915 tagtttctaaggattcaaatattgaagcagtgaaatttggtagcattagctcactatatcaaagtgtgtcaaaatttgaccaacaatatctatggtc 3494819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 21199524 - 21199629
Alignment:
Q  35 tgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttcaagacttgtggctaaggagtcagatat 134  Q
    |||||||||| ||||| |||||||||||||||||||| ||| |||||||||| || || ||||| |||||| ||||||| ||| |  |||||||  ||||    
T  21199524 tgtatgctgaggcaggaaaggattttgttgatgctctcttcggcttcttaacattgcctttaggaactattgcaagactagtgtccgaggagtcgaatat 21199623  T
Q  135 tgaagc 140  Q
    ||||||    
T  21199624 tgaagc 21199629  T

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Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 23342959 - 23342851
Alignment:
Q  8 tggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttc 107  Q
    ||||| |||||||||  ||||||||  ||| |||||||||||| ||||| ||||| |||| ||| || ||||||||||| || || ||||| |||||| |    
T  23342959 tggtgaacaaagaaaccaacaaagtcttgtttgctgaagcaggaaaggactttgtggatgttctgtttagcttcttaacattgcctttaggaactattgc 23342860  T
Q  108 aagacttgt 116  Q
    |||||||||    
T  23342859 aagacttgt 23342851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 28160509 - 28160692
Alignment:
Q  35 tgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttcaagacttgtggctaaggagtcagatat 134  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  28160509 tgtatgctgaagcagggaaggattttgttggtgctcttttcagcttcttaaccttactgttaggtactatttctagacttgtggctaaggagtcagatat 28160608  T
Q  135 tgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatctatggtccaatacctg 218  Q
    ||| ||||||| || ||| ||||||||||||||  |||| || || |||||||||||||||| |||||||||||||||||||||    
T  28160609 tgacgcagtgaaatttggcagcctgagtacactgcatcatagcgtctcagatcttgatgaactctatctatggtccaatacctg 28160692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 10988818 - 10989001
Alignment:
Q  9 ggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactatttca 108  Q
    |||||| |||||||  ||||||||| |||||||||| |||| ||||||||| ||||||| ||| |||||||||||||| || || ||||| |||||| |     
T  10988818 ggtggataaagaaagtaacaaagttctgtatgctgaggcagtgaaggatttcgttgatgttctcttcagcttcttaacattgcctttagggactattgcg 10988917  T
Q  109 agacttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgat 192  Q
    |||||||||||||  |||||| |||||||||||||   || ||||||| | ||| |||| |||||||||||   ||||||||||    
T  10988918 agacttgtggctacagagtcaaatattgaagcagttcaatttggtagcattagttcactatatcaaagtgtgaaagatcttgat 10989001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 15380177 - 15380360
Alignment:
Q  7 atggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactattt 106  Q
    |||||||| | |||||  ||||||||| | ||||  || ||||||||||||||||||||| ||||||||||||||||||  || || ||||| ||||||     
T  15380177 atggtggatagagaaaggaacaaagttctatatgtagaggcagggaaggattttgttgatactcttttcagcttcttaatatttcctttagggactattg 15380276  T
Q  107 caagacttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttg 190  Q
    ||||||||| ||||||||||||| |||| || ||||||| || ||| ||| ||||  || | ||  |||||||||| |||||||    
T  15380277 caagacttgcggctaaggagtcaaatatcgacgcagtgaaatttggaagcttgagctcattgtacgaaagtgtatcggatcttg 15380360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 3151062 - 3151263
Alignment:
Q  7 atggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccgttaggtactattt 106  Q
    ||||||||||||||||  ||||| ||| | |||||||| || ||||||||||| || |||| |||||| || || ||||| |||||  |||| ||||||     
T  3151062 atggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctagggactattg 3151160  T
Q  107 caagacttgtggctaaggagtcagatattgaagcagtgagatctggtagcctgagtacactttatcaaagtgtatcagatcttgatgaacactatctatg 206  Q
    |||||||  |  || |||||||| ||||||||||||||| |  ||| ||| | ||  || | |||| | ||||||| ||||||||| |||| ||||||||    
T  3151161 caagactcatttctcaggagtcaaatattgaagcagtgaaacttggcagcataagctcattgtatcgaggtgtatcggatcttgatcaacaatatctatg 3151260  T
Q  207 gtc 209  Q
    |||    
T  3151261 gtc 3151263  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 1157443 - 1157403
Alignment:
Q  76 agcttcttaaccttaccgttaggtactatttcaagacttgt 116  Q
    ||||||||||||||||| |||||||| ||| ||||||||||    
T  1157443 agcttcttaaccttaccattaggtaccattgcaagacttgt 1157403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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