View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_468 (Length: 229)
Name: NF11982A_low_468
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_468 |
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Alignment Details
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 21831299 - 21831237
Alignment:
| Q |
5 |
gtaaccgacctctccttcttccctcaatttcctctcttccacttctctacc-aaacacaacac |
66 |
Q |
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| T |
21831299 |
gtaaccgacctctccttcttccctcaatttcctctcttccacttctctaccaaaacacaacac |
21831237 |
T |
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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 21831125 - 21831073
Alignment:
| Q |
177 |
cgttttccattacatttcatatttgtcatagcgttttccattccatttccaaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21831125 |
cgttttccattacatttcatatttgtcatagcgttttccattccatttccaaa |
21831073 |
T |
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