View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_47 (Length: 407)
Name: NF11982A_low_47
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 7440462 - 7440845
Alignment:
| Q |
19 |
ctaagactgttagactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgttagaaggttcatttgccctcaatcctccttctagcac |
118 |
Q |
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| T |
7440462 |
ctaagactgttatactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgctaaaaggttcatttgccctcaatcctccttctagcac |
7440561 |
T |
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| Q |
119 |
caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgtta----aatgg |
214 |
Q |
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| T |
7440562 |
caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgttaaattaatgg |
7440661 |
T |
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| Q |
215 |
ctagagtgaattgaggaaatcaagcgttataaattatctttaattttgatttctaagttgttaaagtatacctaatatatgcaaaacattaaagaaggca |
314 |
Q |
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| T |
7440662 |
ctagagtgaattgaggaaatcaagtgttataaattatctttaattttgatttctaagttgttaaagtttacctaatatatgcaagacattaaataaggca |
7440761 |
T |
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| Q |
315 |
agggccggttgtattatggctcatcagaggtaatattgttaactgaatcatagcagtaatactatatatattgtttgtaacacc |
398 |
Q |
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| T |
7440762 |
aggggcggtagtagtatggctcatcagaggtaatattgttaactgaatcatagtagtaatattatatatattgtttgtaacacc |
7440845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 6397845 - 6397803
Alignment:
| Q |
355 |
aactgaatcatagcagtaatactatatatattgtttgtaacac |
397 |
Q |
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| T |
6397845 |
aactgaatcatagtaataatactatatatattgcttgtaacac |
6397803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 36010202 - 36010253
Alignment:
| Q |
345 |
taatattgttaactgaatcatagcagtaatactatatatattgtttgtaaca |
396 |
Q |
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| T |
36010202 |
taatattgtgaactgaatcgtagaagtagtattatatatattgtttgtaaca |
36010253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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