View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_476 (Length: 228)
Name: NF11982A_low_476
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_476 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 37903707 - 37903516
Alignment:
| Q |
20 |
gttcaacacaacgcagcttttgctctctatggtctggctgataatgaggagaagttagtttccttgttttttactcgttcagcatagtatgtggcccttt |
119 |
Q |
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| T |
37903707 |
gttcaacacaacgcagcttttgctctctatggtctggctgataatgaggtgaagttagtttccttgttttttactcgttcagcatagtatgtggcccttt |
37903608 |
T |
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| Q |
120 |
attaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgacaggacaatgttgcggttataattaaggctggtagttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37903607 |
attaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgacaggacaatgttgcggttataattaaggctggtggttt |
37903516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 37910218 - 37910027
Alignment:
| Q |
20 |
gttcaacacaacgcagcttttgctctctatggtctggctgataatgaggagaagttagtttccttgttttttactcgttcagcatagtatgtggcccttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910218 |
gttcaacacaacgcagcttttgctctctatggtctggctgataatgaggtgaagttagtttccttgttttttactcgttcagcatagtatgtggcccttt |
37910119 |
T |
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| Q |
120 |
attaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgacaggacaatgttgcggttataattaaggctggtagttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37910118 |
attaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgacaggacaatgttgcggttataattaaggctggtggttt |
37910027 |
T |
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