View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_478 (Length: 228)

Name: NF11982A_low_478
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_478
NF11982A_low_478
[»] chr2 (4 HSPs)
chr2 (1-183)||(43777256-43777440)
chr2 (40-122)||(2995839-2995920)
chr2 (63-112)||(20625300-20625349)
chr2 (49-122)||(23914731-23914804)
[»] chr1 (4 HSPs)
chr1 (46-122)||(42561686-42561762)
chr1 (47-122)||(42560996-42561071)
chr1 (63-109)||(34969385-34969431)
chr1 (63-140)||(40368038-40368115)
[»] chr4 (4 HSPs)
chr4 (63-109)||(32547389-32547435)
chr4 (63-109)||(2133521-2133567)
chr4 (40-122)||(17982095-17982176)
chr4 (63-109)||(18419292-18419338)
[»] chr8 (3 HSPs)
chr8 (45-110)||(7718313-7718378)
chr8 (48-113)||(13765852-13765917)
chr8 (42-82)||(14537999-14538039)
[»] chr5 (3 HSPs)
chr5 (46-135)||(3955872-3955961)
chr5 (49-122)||(27175125-27175198)
chr5 (63-109)||(42027689-42027735)
[»] chr3 (1 HSPs)
chr3 (51-120)||(49758125-49758194)
[»] scaffold0009 (1 HSPs)
scaffold0009 (63-122)||(53670-53729)
[»] chr7 (1 HSPs)
chr7 (50-122)||(24650234-24650306)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 43777440 - 43777256
Alignment:
Q  1 aacaatatataagagtctttaacaaaacaatatgcatgaggaatgagagattttgggctagatttttcattatttcaattattctctttaacaatctttt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43777440 aacaatatataagagtctttaacaaaacaatatacatgaggaatgagagattttgggctagatttttcattatttcaattattctctttaacaatctttt 43777341  T
Q  101 ctataataatgatatattgttgctctagttgaaaaagata--cgttaacgtcacatatagtagctaaatagatccaagttttctt 183  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  43777340 ctataataatgatatattgttgctctagttgaaaaagataagagttaacgtcacatatagtagctaaatagatccaagttttctt 43777256  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 2995839 - 2995920
Alignment:
Q  40 ggaatgagagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 122  Q
    ||||||||| ||||||  ||| ||||||||||||| ||||||  | ||| |||||  ||||||||| ||||||||||||||||    
T  2995839 ggaatgagatattttgacctacatttttcattattccaattacac-cttaaacaaaattttctatagtaatgatatattgttg 2995920  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 20625300 - 20625349
Alignment:
Q  63 tttttcattatttcaattattctctttaacaatcttttctataataatga 112  Q
    ||||||||||| |||||||| ||||  |||||| ||||||||||||||||    
T  20625300 tttttcattatctcaattatactctaaaacaattttttctataataatga 20625349  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 23914731 - 23914804
Alignment:
Q  49 gattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 122  Q
    |||||||| || |||||||||||||| ||||||| ||||| |||||  ||  |||||| |||| ||||||||||    
T  23914731 gattttggactggatttttcattattccaattatactcttaaacaaatttgcctataagaatgttatattgttg 23914804  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 42561762 - 42561686
Alignment:
Q  46 agagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 122  Q
    ||||||||||||||   |||||||||||| ||||||||| ||| |||||  |||||||||| |||| ||||||||||    
T  42561762 agagattttgggctgactttttcattattccaattattcccttcaacaaatttttctataacaatgttatattgttg 42561686  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 42561071 - 42560996
Alignment:
Q  47 gagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 122  Q
    ||||||||||  | |||||||||||||| ||||||| | ||| |||||  ||||||||||||||| ||||||||||    
T  42561071 gagattttggattggatttttcattattccaattatacccttaaacaaatttttctataataatgttatattgttg 42560996  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 34969431 - 34969385
Alignment:
Q  63 tttttcattatttcaattattctctttaacaatcttttctataataa 109  Q
    |||||||||||| ||||||| ||||| |||||| |||||||||||||    
T  34969431 tttttcattattccaattatactcttaaacaattttttctataataa 34969385  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 40368038 - 40368115
Alignment:
Q  63 tttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttgctctagttgaaaaagata 140  Q
    |||||||||||| ||||||| | ||| |||||  ||||||||| ||||| |||||||||| | |  ||||||||||||    
T  40368038 tttttcattattccaattatacccttaaacaaatttttctatattaatgttatattgttggtgtcattgaaaaagata 40368115  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 32547435 - 32547389
Alignment:
Q  63 tttttcattatttcaattattctctttaacaatcttttctataataa 109  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||    
T  32547435 tttttcattatttcaattatactcttaaacaattttttctataataa 32547389  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 2133521 - 2133567
Alignment:
Q  63 tttttcattatttcaattattctctttaacaatcttttctataataa 109  Q
    ||||||||||| |||||||| ||||| |||||| |||||||||||||    
T  2133521 tttttcattatctcaattatactcttaaacaattttttctataataa 2133567  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 17982095 - 17982176
Alignment:
Q  40 ggaatgagagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 122  Q
    ||||||||| ||||||  ||| ||||||||||||| ||||||  | ||| |||||  ||||||||| ||||||||||||||||    
T  17982095 ggaatgagatattttgacctacatttttcattattccaattacac-cttaaacaaaattttctatagtaatgatatattgttg 17982176  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 18419292 - 18419338
Alignment:
Q  63 tttttcattatttcaattattctctttaacaatcttttctataataa 109  Q
    |||||||||||||||||||| | ||| |||||| |||||||||||||    
T  18419292 tttttcattatttcaattatacccttgaacaattttttctataataa 18419338  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 7718378 - 7718313
Alignment:
Q  45 gagagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataat 110  Q
    |||||||||||| |||||||||||||||||  ||||||   ||| ||||| |||||||||||||||    
T  7718378 gagagattttggactagatttttcattattctaattatatccttgaacaaacttttctataataat 7718313  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 13765852 - 13765917
Alignment:
Q  48 agattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgat 113  Q
    ||||||||||||  |||||||||||| | |||||| ||||  |||||| |||||||||||||||||    
T  13765852 agattttgggctgaatttttcattatctaaattatactctaaaacaattttttctataataatgat 13765917  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 14537999 - 14538039
Alignment:
Q  42 aatgagagattttgggctagatttttcattatttcaattat 82  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  14537999 aatgagagattttgggctatattttttattatttcaattat 14538039  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 3955961 - 3955872
Alignment:
Q  46 agagattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttgctctagttgaaaa 135  Q
    |||||||||||| | |||||||||||||| ||||| | |  || |||||  |||||| ||||||||||||||||||| | | ||||||||    
T  3955961 agagattttgggttggatttttcattattccaattgtacctttaaacaaatttttctttaataatgatatattgttgatgtcgttgaaaa 3955872  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 27175125 - 27175198
Alignment:
Q  49 gattttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 122  Q
    ||||||||||| |||||||  ||||| ||||||| |  || |||||| ||||||||||||||| ||||||||||    
T  27175125 gattttgggctggattttttgttattccaattataccattaaacaatgttttctataataatgttatattgttg 27175198  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 42027735 - 42027689
Alignment:
Q  63 tttttcattatttcaattattctctttaacaatcttttctataataa 109  Q
    ||||||||||| |||||||| ||||| |||||| |||||||||||||    
T  42027735 tttttcattatctcaattatactcttaaacaattttttctataataa 42027689  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 49758194 - 49758125
Alignment:
Q  51 ttttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgt 120  Q
    ||||||| | ||||||| |||||||||||||| | ||| |||||| ||||||||||||||  ||||||||    
T  49758194 ttttgggttggattttttattatttcaattatacccttaaacaattttttctataataatattatattgt 49758125  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 53670 - 53729
Alignment:
Q  63 tttttcattatttcaattattctctttaa-caatcttttctataataatgatatattgttg 122  Q
    ||||||||||||||||||||  ||||||| |||  ||||||||||||||| ||||||||||    
T  53670 tttttcattatttcaattata-tctttaaacaaatttttctataataatgttatattgttg 53729  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 24650234 - 24650306
Alignment:
Q  50 attttgggctagatttttcattatttcaattattctctttaacaatcttttctataataatgatatattgttg 122  Q
    ||||| ||||| ||||||||||||||||||||  | ||| ||||| |||| || ||||||||  |||||||||    
T  24650234 attttaggctacatttttcattatttcaattaaacccttaaacaaactttcctgtaataatgcaatattgttg 24650306  T

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