View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_481 (Length: 227)
Name: NF11982A_low_481
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_481 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 20597615 - 20597754
Alignment:
| Q |
88 |
ttagtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttca |
187 |
Q |
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| T |
20597615 |
ttagtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttca |
20597714 |
T |
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| Q |
188 |
tgtcaacctgcaaagatggtcttgtgactgcaggaaatgg |
227 |
Q |
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| T |
20597715 |
tgtcaacctgcaaagatggtcttgtgactgcaggaaatgg |
20597754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 20597437 - 20597514
Alignment:
| Q |
1 |
tcagagtgtacttgatggagagatgggaagcaaacaggcagaaagctgcaatgttgaaggatggtgtgttacccaaca |
78 |
Q |
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| T |
20597437 |
tcagagtgtacctgatggagagatgggaagcaaacaggcagaaagctgcaatgttggaggatggtgtgttacccaaca |
20597514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 8698618 - 8698755
Alignment:
| Q |
90 |
agtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttcatg |
189 |
Q |
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| T |
8698618 |
agtagcgatactaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttagacatgtttctttaactggtcacaagtttcatg |
8698717 |
T |
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| Q |
190 |
tcaacctgcaaagatggtcttgtgactgcaggaaatgg |
227 |
Q |
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| T |
8698718 |
tcaacctgcaaagatggtcttgtgactgcaggaaatgg |
8698755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8698437 - 8698514
Alignment:
| Q |
1 |
tcagagtgtacttgatggagagatgggaagcaaacaggcagaaagctgcaatgttgaaggatggtgtgttacccaaca |
78 |
Q |
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| T |
8698437 |
tcagagtgtacctgatggagagatgggaagcaaacaggcagaaagctgcaatgttggaggatggtgtgttacccaaca |
8698514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 37101878 - 37101837
Alignment:
| Q |
3 |
agagtgtacttgatggagagatgggaagcaaacaggcagaaa |
44 |
Q |
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| T |
37101878 |
agagtgtacctgatggagagatgggaagcaaataggcagaaa |
37101837 |
T |
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