View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_488 (Length: 225)
Name: NF11982A_low_488
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_488 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23407898 - 23407674
Alignment:
| Q |
1 |
gttcttggaattggttcttctctgccccaaacccatgctggccacgaggcagggtggtgttgctcgttttcaacgagtttcctcgctgccatttgcacta |
100 |
Q |
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| T |
23407898 |
gttcttggtattggttcttctctgccccaaacccatgctggccacgaggcagggtggtgttgctcgttttcaaggagattcctcgctgccatttgcacta |
23407799 |
T |
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| Q |
101 |
gtgagccatgttaagcatttgatgaccaaagcatgacaatgaataagcattttatgtaatggttcctaaaattgataatgtaataaaatgataattgtga |
200 |
Q |
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| T |
23407798 |
gggagccatgttaagcatttgatgacctaagcatgacaatgaataagcattttctgtaatggttcctaaaattgataatggaataaaatgataattgtga |
23407699 |
T |
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| Q |
201 |
attgattgtgaaatgaaaggtaaaa |
225 |
Q |
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| T |
23407698 |
attgattgtgaaatgaaaggtaaaa |
23407674 |
T |
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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 13436916 - 13436844
Alignment:
| Q |
153 |
tatgtaatggttcctaaaattgataatgtaataaaatgataattgtgaattgattgtgaaatgaaaggtaaaa |
225 |
Q |
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| T |
13436916 |
tatgtaatggttcctaaaattgataatggaataaaatgataattgtgaattgattgtgaaatgaaaggtaaaa |
13436844 |
T |
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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 42954774 - 42954846
Alignment:
| Q |
153 |
tatgtaatggttcctaaaattgataatgtaataaaatgataattgtgaattgattgtgaaatgaaaggtaaaa |
225 |
Q |
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| T |
42954774 |
tatgtaatggtttctaaaattgataatggaataaaatgataattgtgaattgattgtgaaatgaaaggtaaaa |
42954846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 5700273 - 5700201
Alignment:
| Q |
154 |
atgtaatggttcctaaaattgataatgtaataaaa-tgataattgtgaattgattgtgaaatgaaaggtaaaa |
225 |
Q |
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||||||| ||||||||||| |||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |
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| T |
5700273 |
atgtaataattcctaaaatttataatgaaataaaaataataatcgtgaattgattgtgaaatgaaaggtaaaa |
5700201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 11364459 - 11364529
Alignment:
| Q |
155 |
tgtaatggttcctaaaattgataatgtaataaaatgataattgtgaattgattgtgaaatgaaaggtaaaa |
225 |
Q |
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||||||||||||||||||||| ||||| ||||| |||||||||| ||||| || | |||| |||||||||| |
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| T |
11364459 |
tgtaatggttcctaaaattgagaatgtgataaattgataattgtaaattgtttattaaatcaaaggtaaaa |
11364529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 26998501 - 26998445
Alignment:
| Q |
151 |
tttatgtaatggttcctaaaattgataatgtaataaaat-gataattgtgaattgatt |
207 |
Q |
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||||||||| ||||||||||||||| |||| |||||||| ||||||||| |||||||| |
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| T |
26998501 |
tttatgtaagggttcctaaaattgagaatgaaataaaatggataattgt-aattgatt |
26998445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 29292165 - 29292235
Alignment:
| Q |
155 |
tgtaatggttcctaaaattgataatgtaataaaatgataattgtgaattgattgtgaaatgaaaggtaaaa |
225 |
Q |
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|||||||||| |||||||||| | ||| ||||| ||||||||||||||||||| | || |||||||||||| |
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| T |
29292165 |
tgtaatggtttctaaaattgaaagtgtgataaattgataattgtgaattgattattaagtgaaaggtaaaa |
29292235 |
T |
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