View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_494 (Length: 224)
Name: NF11982A_low_494
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_494 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 6306693 - 6306851
Alignment:
| Q |
1 |
gaacacatgacataattaacaagaagctaagccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag |
100 |
Q |
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| T |
6306693 |
gaacacatgacataattaataagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgccgtcggtgaaagaaggatttgaattag |
6306792 |
T |
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| Q |
101 |
ctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaagaaatat |
159 |
Q |
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| T |
6306793 |
cgacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaagaaatat |
6306851 |
T |
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Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 39538896 - 39539052
Alignment:
| Q |
3 |
acacatgacataattaacaagaagctaagccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagct |
102 |
Q |
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| T |
39538896 |
acacatgacgtaattaacaagaagctaaacccaggtgaaaggatcgatgtgaatatctttggtggcaacgccgtcggtgaaagaaggatttgaattagcg |
39538995 |
T |
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| Q |
103 |
acggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaagaaatat |
159 |
Q |
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| T |
39538996 |
acggattcttcgggtggagaagtgataccgaatgagtttgcttcaattaagaaatat |
39539052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 20627 - 20782
Alignment:
| Q |
1 |
gaacacatgacataattaacaagaagctaagccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag |
100 |
Q |
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| T |
20627 |
gaacacatgacataattaacaagaagctaaatccaagcgaaaggatcgatgtgaatatctttggtggcgatgctgtcggtgaaagaaggatttgaattag |
20726 |
T |
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| Q |
101 |
ctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggttaagaaa |
156 |
Q |
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| T |
20727 |
cgacggattcttcgggtggagaagtgataccgaatgagtttgcttcgattaagaaa |
20782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 33809090 - 33809237
Alignment:
| Q |
12 |
ataattaacaagaagctaagccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacggattct |
111 |
Q |
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| T |
33809090 |
ataattaacaagaagctaaacccaggtcaaaggatcgatgtgaatatcttttgtggcgacgccgtcggtgaaagaaggatttgaattagcgacgcattca |
33809189 |
T |
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| Q |
112 |
tcaggtcgagaagtgatactgaatgagtttgcttcggttaagaaatat |
159 |
Q |
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| T |
33809190 |
tcgggtcgagaagtgataccgaatgagtttgcttcgattaagaaatat |
33809237 |
T |
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