View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_502 (Length: 222)
Name: NF11982A_low_502
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_502 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 56069817 - 56069678
Alignment:
| Q |
7 |
aaaacatcacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctg |
106 |
Q |
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| T |
56069817 |
aaaacatcacagaggtgtaccacaaatggcagaaactggtaagcacacttta----atttacttttccaaaacttgacaaaattgagttaaatgcatctg |
56069722 |
T |
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| Q |
107 |
ctgttaatttctcgtttctttccaatgtcatcgacgatgtttcc |
150 |
Q |
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| T |
56069721 |
ctgttaatttctcgtttctttccaatttcatcgacgatttttcc |
56069678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 56069644 - 56069573
Alignment:
| Q |
151 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccg |
222 |
Q |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccg |
56069573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 38398501 - 38398594
Alignment:
| Q |
7 |
aaaacatcacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
105 |
Q |
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| T |
38398501 |
aaaacatcacagaggtgtaccacaattggcagaagctggtaag-acact----ttaatctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 38398695 - 38398766
Alignment:
| Q |
151 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccg |
222 |
Q |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccg |
38398766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 10171013 - 10171075
Alignment:
| Q |
158 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaac |
220 |
Q |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaac |
10171075 |
T |
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