View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_514 (Length: 217)

Name: NF11982A_low_514
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_514
NF11982A_low_514
[»] chr5 (5 HSPs)
chr5 (37-156)||(32268817-32268936)
chr5 (45-180)||(41900181-41900316)
chr5 (124-196)||(32268755-32268825)
chr5 (38-105)||(41886279-41886346)
chr5 (123-172)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (112-179)||(15091347-15091414)
chr7 (114-176)||(10168806-10168868)
chr7 (114-176)||(10176331-10176393)
chr7 (51-92)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (118-179)||(2460597-2460658)
chr4 (100-173)||(2367656-2367729)
chr4 (118-167)||(2547544-2547593)
chr4 (121-173)||(2381378-2381430)
chr4 (119-179)||(6007665-6007725)
chr4 (115-173)||(566629-566687)
chr4 (120-173)||(2525763-2525816)
chr4 (122-167)||(12124836-12124881)
chr4 (122-167)||(12126892-12126937)
chr4 (114-179)||(55907434-55907499)
chr4 (121-173)||(2486313-2486365)
chr4 (121-173)||(5035628-5035680)
chr4 (133-179)||(1547469-1547515)
chr4 (115-165)||(2376228-2376278)
chr4 (121-159)||(2380123-2380161)
chr4 (118-167)||(2472104-2472153)
chr4 (112-152)||(8445271-8445311)
chr4 (132-172)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (112-179)||(513426-513493)
chr3 (114-165)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (113-173)||(14821628-14821688)
chr6 (121-173)||(6395781-6395833)
chr6 (121-169)||(6427432-6427480)
chr6 (133-167)||(6437161-6437195)
chr6 (131-173)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (114-173)||(32152212-32152271)
chr8 (121-167)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (114-179)||(1036176-1036241)
chr2 (114-167)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (124-173)||(15837967-15838016)
chr1 (114-173)||(33161439-33161498)
chr1 (121-165)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 32268936 - 32268817
Alignment:
Q  37 tcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 136  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268936 tcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 32268837  T
Q  137 ccaaacagttactctccatc 156  Q
    ||||||||||||||||||||    
T  32268836 ccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 41900181 - 41900316
Alignment:
Q  45 ttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacag 144  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||  | |||||||||||||||  ||||||||||||||    
T  41900181 ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaatctctctcactcgtctccaaacag 41900280  T
Q  145 ttactctccatcaccaaccgtcttcgattatctctt 180  Q
    || |||||||||||||||  ||||||||| ||||||    
T  41900281 tttctctccatcaccaacactcttcgattctctctt 41900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 32268825 - 32268755
Alignment:
Q  124 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatcc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat--tctctctcacagtctatgatcc 32268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 41886279 - 41886346
Alignment:
Q  38 caatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 105  Q
    ||||||||  |||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  41886279 caatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  123 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 172  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  112 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 179  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  114 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 176  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  114 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 176  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  51 ttcatatctaccagatgagtgttgggaatgtgtcttcaaatt 92  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  118 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 179  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  100 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  118 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 167  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  121 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  119 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 179  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  115 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  120 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  122 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 167  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  122 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 167  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  114 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 179  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  121 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  121 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  133 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 179  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  115 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 165  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  121 tctctctccatcgtctccaaacagttactctccatcacc 159  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  118 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 167  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  112 tgcttgaaatctctctccatcgtctccaaacagttactctc 152  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  132 cgtctccaaacagttactctccatcaccaaccgtcttcgat 172  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  112 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 179  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  114 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 165  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  113 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  121 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  121 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 169  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  133 gtctccaaacagttactctccatcaccaaccgtct 167  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  131 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  114 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  121 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 167  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  114 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 179  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  114 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 167  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  124 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  114 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 173  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  121 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 165  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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