View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_518 (Length: 215)
Name: NF11982A_low_518
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_518 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2902030 - 2901816
Alignment:
| Q |
1 |
atatatactgttctctttcgctgttcatgaggtttcagttcagtaataaaaacatgacctaataatcttaagggacaaagttcaaatcccctcgagtgcc |
100 |
Q |
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| T |
2902030 |
atatatactgttctctttcgctgttcatgaggttttagttcagtaataaaaacatgacctaataatcttaagggacaaagttcaaatcccctcgagtacc |
2901931 |
T |
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| Q |
101 |
tacgtcattttaacaaacaataaattccatgacattgtgttctaaaggtatctgggagagtgacttataatggacatgggatggatgaatttgtacctca |
200 |
Q |
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| T |
2901930 |
tacgtcattttaacaaacaataaattccatgacattgtgttctaaaggtatctgggagagtgacttataatggacatgggatggatgaatttgtacctca |
2901831 |
T |
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| Q |
201 |
aagaactgctgcata |
215 |
Q |
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||||||||||||||| |
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| T |
2901830 |
aagaactgctgcata |
2901816 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2882980 - 2883076
Alignment:
| Q |
1 |
atatatactgttctctttcgctgttcatgaggtttcagttcagtaataaaaacatgacctaataatcttaagggacaaagttcaaatcccctcgagt |
97 |
Q |
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| T |
2882980 |
atatatattgttctctttcactgttcacggggtttcagttcagtggtaaaaacttgaccttataatcttaagggagaaagttcaaatcccctcgagt |
2883076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 2883142 - 2883211
Alignment:
| Q |
146 |
aggtatctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcata |
215 |
Q |
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| T |
2883142 |
aggtatcagggagagtaacttataatggacatgggatggatgaatttgtacctcagagaactgctgcata |
2883211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 2872944 - 2873009
Alignment:
| Q |
150 |
atctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcata |
215 |
Q |
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| T |
2872944 |
atctggtagagtgacttataatggatatggaatggatgaatttgtacctcaaagaactgctgcata |
2873009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 39333840 - 39333904
Alignment:
| Q |
151 |
tctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcata |
215 |
Q |
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| T |
39333840 |
tctggaagggtgacttataatggtcatgagatgagtgaatttgtcccccaaagaactgctgcata |
39333904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 39345119 - 39345180
Alignment:
| Q |
151 |
tctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgc |
212 |
Q |
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| T |
39345119 |
tctggaagggtgacttataatggtcatgagatgagtgaatttgtcccccaaagaactgctgc |
39345180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 39551864 - 39551815
Alignment:
| Q |
163 |
acttataatggacatgggatggatgaatttgtacctcaaagaactgctgc |
212 |
Q |
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| T |
39551864 |
acttataatggtcatgagatgaatgagtttgtgcctcaaagaactgctgc |
39551815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 39592727 - 39592674
Alignment:
| Q |
159 |
agtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgc |
212 |
Q |
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| T |
39592727 |
agtgagttataatggtcatgagatgaaagaatttgtaccccaaagaactgctgc |
39592674 |
T |
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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 39359673 - 39359725
Alignment:
| Q |
160 |
gtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgc |
212 |
Q |
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| T |
39359673 |
gtgacttataatggtcatgagatgagtgagtttgtaccccaaagaactgctgc |
39359725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 39578254 - 39578202
Alignment:
| Q |
160 |
gtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgc |
212 |
Q |
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| T |
39578254 |
gtgacttacaacggtcatgagatgaatgagtttgtacctcaaagaactgctgc |
39578202 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 44226517 - 44226457
Alignment:
| Q |
152 |
ctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgc |
212 |
Q |
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| T |
44226517 |
ctgggagtgtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgc |
44226457 |
T |
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