View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_52 (Length: 400)
Name: NF11982A_low_52
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_52 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 33 - 392
Target Start/End: Complemental strand, 52725997 - 52725638
Alignment:
| Q |
33 |
ttcggttggattcaatcaatatctctaatttctcatcattgcacatgtttaacgacatttacttaatcaggtgcatgaatctcaagcacaaaaagtacaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52725997 |
ttcggttggattcaatcaatatctctaatttctcatcattgcacatgtttaacgacatttacttaatcaggtgcatgaatctcaagcacaaaaagtacaa |
52725898 |
T |
|
| Q |
133 |
aactaactatagctaattgtgtttgaaacgaccagcaagatagaagcaataaaccatatgtgtatgtgccatgctttatcaatggccgaccgtatatgat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52725897 |
aactaactatagctaattgtgtttgaaacgaccagcaagatagaagcaataaaccatatgtgtatgtgccatgctttatcaatggccgaccgtatgtgat |
52725798 |
T |
|
| Q |
233 |
tgattttctaacaaagttaattcacatttattctttgttaccctaattaatgaagttattatatagataagtttcaatctaattcatatttatatagtgt |
332 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52725797 |
tgattttctaacaaagctaattcacatttattctttgttaccctaattaatgaagttattatatagataagtttcaatctaattcatatttacatagtgt |
52725698 |
T |
|
| Q |
333 |
caacttgatgcaagactttgataggctaaaatttatctatttatatagttttatctcatt |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52725697 |
caacttgatgcaagactttgataggctaaaatttatctatttatatagttttatttcatt |
52725638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University