View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_521 (Length: 214)
Name: NF11982A_low_521
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_521 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 20528888 - 20529099
Alignment:
| Q |
3 |
agtagtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgg |
102 |
Q |
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| T |
20528888 |
agtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgg |
20528987 |
T |
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| Q |
103 |
gatatgggagagaaagagggcgttcaagcaaagaggaagatgtagaggaagaattaacaagatttagttgaatgcaataagtgtcacaagctaggacact |
202 |
Q |
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| T |
20528988 |
gatatgggagaggaagagggcgttcaagcaaagaggaagatgtggaggaagaattaacaagatttagttgaatgcaataagtgtcacaagctaggacact |
20529087 |
T |
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| Q |
203 |
atcagaatgaat |
214 |
Q |
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|||||||||||| |
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| T |
20529088 |
atcagaatgaat |
20529099 |
T |
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Back To:
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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 16863267 - 16863478
Alignment:
| Q |
6 |
agtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggat |
105 |
Q |
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| T |
16863267 |
agtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggat |
16863366 |
T |
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| Q |
106 |
atgggagagaaagagggcgttcaag-caaagaggaagatgtagaggaagaattaacaa--gatttagttgaatgc-aataagtgtcacaagctaggacac |
201 |
Q |
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| T |
16863367 |
atggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagt-gttgaatgctacaaagtgtcacaagctgggacac |
16863465 |
T |
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| Q |
202 |
tatcagaatgaat |
214 |
Q |
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| T |
16863466 |
tatcaaaatgaat |
16863478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3036515 - 3036730
Alignment:
| Q |
1 |
agagtagtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgt |
100 |
Q |
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| T |
3036515 |
agagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctat |
3036614 |
T |
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| Q |
101 |
gggatatgggagagaaagagggcgttcaag-caaagaggaagatgtagaggaagaattaac-aagatttagttgaatgcaataagtgtcacaagctagga |
198 |
Q |
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| T |
3036615 |
gggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctggga |
3036714 |
T |
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| Q |
199 |
cactatcagaatgaat |
214 |
Q |
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| T |
3036715 |
cactatcagaatgaat |
3036730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 40613108 - 40612981
Alignment:
| Q |
1 |
agagtagtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||| ||||||||||||||||| ||||||| |||||| | || |
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| T |
40613108 |
agagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcgt |
40613009 |
T |
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| Q |
101 |
gggatatgggagagaaagagggcgttca |
128 |
Q |
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||| ||||| |||| |||||| |||||| |
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| T |
40613008 |
ggggtatggtagaggaagaggacgttca |
40612981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20542214 - 20542289
Alignment:
| Q |
1 |
agagtagtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggt |
76 |
Q |
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||||||||||||||||||||||||||| |||||||||||| || ||||| |||| ||| |||||||||||||| |
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| T |
20542214 |
agagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttgaaggt |
20542289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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