View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_526 (Length: 212)
Name: NF11982A_low_526
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_526 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 13960622 - 13960417
Alignment:
| Q |
7 |
tagtgcacctgtgaaatgacaactttggaaaacaaagccacttgagctgtcggatttggttcttccatcggcagctacgaaacattgttgttcttctaat |
106 |
Q |
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| T |
13960622 |
tagtgcacctgtgaaatgacaactttggaaaacaaagccacttgagctgtcagatttggttcttccatcggcagctacgaaacattgttgttcttctaat |
13960523 |
T |
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| Q |
107 |
ggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgac |
206 |
Q |
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| T |
13960522 |
ggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgac |
13960423 |
T |
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| Q |
207 |
gttggg |
212 |
Q |
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|||||| |
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| T |
13960422 |
gttggg |
13960417 |
T |
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Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 13967674 - 13967581
Alignment:
| Q |
119 |
attagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgttggg |
212 |
Q |
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| T |
13967674 |
attagtttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttggg |
13967581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 49870992 - 49871090
Alignment:
| Q |
106 |
tggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattg |
204 |
Q |
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| T |
49870992 |
tggttttctaacgatgagtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
49871090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 6875 - 6835
Alignment:
| Q |
167 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
207 |
Q |
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| T |
6875 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
6835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 44067730 - 44067770
Alignment:
| Q |
167 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
207 |
Q |
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| T |
44067730 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44067770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 44087574 - 44087534
Alignment:
| Q |
167 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
207 |
Q |
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| T |
44087574 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44087534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 44093036 - 44093076
Alignment:
| Q |
167 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
207 |
Q |
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| T |
44093036 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44093076 |
T |
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