View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_530 (Length: 211)
Name: NF11982A_low_530
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_530 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 7140355 - 7140536
Alignment:
| Q |
11 |
catcatcgtccacaccaaagtcaaaggaccctaagaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttaaggaaaagcaac |
110 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| |
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| T |
7140355 |
catcatcgtccacaccaaagtcaaaggaccctaaaaagaagtaggttaatgctggaaaattcaaagaattttgaaataatgttcgttgacgaaaagcaac |
7140454 |
T |
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| Q |
111 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagaccgaagatgttgaacttttctgacatcgattcgtact |
192 |
Q |
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| T |
7140455 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagactgaagatgttgaacttttctgacatcgattcgtact |
7140536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 8656270 - 8656449
Alignment:
| Q |
11 |
catcatcgtccacaccaaagtcaaaggaccctaagaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttaaggaaaagcaac |
110 |
Q |
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| T |
8656270 |
catcatcgtccacaccaaagtcaaaggaccctaaaaataagtaggttaatgctggaaatttcaaagaatttggaaataatgttcgttgaggaaaagcaac |
8656369 |
T |
|
| Q |
111 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagaccgaagatgttgaacttttctgacatcgattcgta |
190 |
Q |
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| T |
8656370 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagactgaagatgtttaacttttttgacatcgattcgta |
8656449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 8679970 - 8680112
Alignment:
| Q |
15 |
atcgtccacaccaaagtcaaaggaccctaagaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttaaggaaaagcaacacaa |
114 |
Q |
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| T |
8679970 |
atcgtccacaccaaagtcaaaggaccctaaaaacaagtaggttaatcatggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacagaa |
8680069 |
T |
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| Q |
115 |
atgtgaagagatgttaaagtgtcacatgaaaagaagtaagacc |
157 |
Q |
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| T |
8680070 |
atgtgaagtgatgttaaagtgtcacatgaaaagaagtaagacc |
8680112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 7115153 - 7115269
Alignment:
| Q |
20 |
ccacaccaaagtcaaaggaccctaagaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttaaggaaaagcaacacaaatgtg |
119 |
Q |
| |
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|||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||| || |||| |||||||| ||| ||| |
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| T |
7115153 |
ccacacgaaagtcaaaggaccataaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtg |
7115252 |
T |
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| Q |
120 |
aagagatgttaaagtgt |
136 |
Q |
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| T |
7115253 |
aagagatgttaaagtgt |
7115269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 7120225 - 7120341
Alignment:
| Q |
20 |
ccacaccaaagtcaaaggaccctaagaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttaaggaaaagcaacacaaatgtg |
119 |
Q |
| |
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|||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||| || |||| |||||||| ||| ||| |
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| T |
7120225 |
ccacacgaaagtcaaaggaccataaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtg |
7120324 |
T |
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| Q |
120 |
aagagatgttaaagtgt |
136 |
Q |
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| T |
7120325 |
aagagatgttaaagtgt |
7120341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 7123629 - 7123745
Alignment:
| Q |
20 |
ccacaccaaagtcaaaggaccctaagaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttaaggaaaagcaacacaaatgtg |
119 |
Q |
| |
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|||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||| || |||| |||||||| ||| ||| |
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| T |
7123629 |
ccacacgaaagtcaaaggaccgtaaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtg |
7123728 |
T |
|
| Q |
120 |
aagagatgttaaagtgt |
136 |
Q |
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||||||||||||||||| |
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| T |
7123729 |
aagagatgttaaagtgt |
7123745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 7175041 - 7175144
Alignment:
| Q |
47 |
acaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttaaggaaaagcaacacaaatgtgaagagatgttaaagtgtcacatgaaaa |
146 |
Q |
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| T |
7175041 |
acaagttggttaaagctggaaaattcagagaatttggaaataatgtttcttgagaatcagaaaaagaaaggttaagagatgttaaagtgtgacatgaaaa |
7175140 |
T |
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| Q |
147 |
gaag |
150 |
Q |
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|||| |
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| T |
7175141 |
gaag |
7175144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 13492369 - 13492331
Alignment:
| Q |
55 |
gttaatgctggaaaattcaaagaatttggaaataatgtt |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13492369 |
gttaatgctggaaaattcaaagaatttggaaataatgtt |
13492331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 38862905 - 38862945
Alignment:
| Q |
55 |
gttaatgctggaaaattcaaagaatttggaaataatgttcg |
95 |
Q |
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| T |
38862905 |
gttaatgcgggcaaattcaaagattttggaaataatgttcg |
38862945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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