View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_532 (Length: 210)
Name: NF11982A_low_532
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_532 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 37359635 - 37359534
Alignment:
| Q |
20 |
ccaaagatcaaggatttctgcaatattttattttctggaattaattctgaccaaattgaagcttgcttaatgcttatgagatttaaaaatcatttcacac |
119 |
Q |
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| T |
37359635 |
ccaaagatcaaggatttctgcaatattttattttctggaattaattctaaccaaattgaagcttgcttaatgcttatgagatttaaaaatcatttcacac |
37359536 |
T |
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| Q |
120 |
ag |
121 |
Q |
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|| |
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| T |
37359535 |
ag |
37359534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 37368429 - 37368530
Alignment:
| Q |
20 |
ccaaagatcaaggatttctgcaatattttattttctggaattaattctgaccaaattgaagcttgcttaatgcttatgagatttaaaaatcatttcacac |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37368429 |
ccaaagatcaatgatttctgcaatattttattttctggaattaattctaaccaaattgaagcttgcttaatgcttatgagatttaaaaatcatttcacac |
37368528 |
T |
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| Q |
120 |
ag |
121 |
Q |
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|| |
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| T |
37368529 |
ag |
37368530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 37381832 - 37381732
Alignment:
| Q |
20 |
ccaaagatcaaggatttctgcaatattttattttctggaattaattctgaccaaattgaagcttgcttaatgcttatgagatttaaaaatcatttcacac |
119 |
Q |
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|||||||||| |||| || ||||||||||||||| ||||||||| | || |||||||||||||||||||||| ||||| | ||||||| ||| | ||||| |
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| T |
37381832 |
ccaaagatcatggatctcagcaatattttattttttggaattaagtttggccaaattgaagcttgcttaatgattatgtgttttaaaattcaatccacac |
37381733 |
T |
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| Q |
120 |
a |
120 |
Q |
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| T |
37381732 |
a |
37381732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 37390678 - 37390597
Alignment:
| Q |
39 |
gcaatattttattttctggaattaattctgaccaaattgaagcttgcttaatgcttatgagatttaaaaatcatttcacaca |
120 |
Q |
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||||||||||||||||||||||||||| || ||||||||||| |||||||||| |||| | ||||||||||| | |||||| |
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| T |
37390678 |
gcaatattttattttctggaattaattttggccaaattgaagtttgcttaatgattatttggtttaaaaatcaatccacaca |
37390597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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